Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq841 116 2e-21 seq1364 107 1e-18 seq486 104 2e-17 seq1915 84.2 1e-11 >seq841 Length=1035533 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||||| | | || |||||||||| || |||||||||||| |||||||| | Sbjct 649928 TCCTCCCCGTAGACGGAGAACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGC 649987 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || | || |||| || || ||||| ||||||||||||| || ||||||||| | || Sbjct 649988 AAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGG 650047 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || || ||||| | || || || ||| | |||| || | ||||| Sbjct 650048 GATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGAC 650107 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct 650108 CTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATG 650156 >seq1364 Length=85398 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | || ||||| || | || || || || ||||| ||||| | Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || ||||||||||| ||||||||||| || || ||||||||| | || Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || ||| ||||| | |||| || || ||| || Sbjct 46430 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACC 46371 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || || || ||||| |||||||| |||||||||||||| Sbjct 46370 TCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 46324 >seq486 Length=444201 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 34754 CCCCTC--AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATA 34811 |||||| | ||| || || || || | |||| ||| || |||||||| ||||| | | Sbjct 170493 CCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCCA 170552 Query 34812 GGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCA 34871 | || |||| || | ||||| || || || |||| ||||||||||||| |||| | Sbjct 170553 ATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGGA 170612 Query 34872 CCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCG 34927 || || ||||| | ||||| ||| || || ||||||| ||| | || Sbjct 170613 TACCTTCTTTGTCCTGAATTTTAGTTTTAAC--AT--TATCGATTGTATCAGAAGATTCT 170668 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||||||||||||||||| || || ||||||||||| ||||| Sbjct 170669 ACCTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || | ||||| ||| || ||||||||||| || |||| ||| | ||| |||| Sbjct 169139 AGTACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCAAGGGTCCGCCCATCT 169198 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||||| | |||||| || | || | ||||||||||| Sbjct 169199 TCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGGATTCCCTCCTTGTCT 169258 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || ||| | || | || | ||| || |||| || |||||| Sbjct 169259 TGGATCTTTGCCTTTACGTTGTCAATGGTATCTGATGACTCAACCTCAAGTGTGATGGTC 169318 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| ||||| || ||||| Sbjct 169319 TTTCCTGTCAAAGTCTTAACAAATATTTGCAT 169350 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || ||||| | || || ||||| | |||| ||| ||||||||||| ||||| | Sbjct 169350 TTCCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGG 169409 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | || |||| |||| ||||||||| || ||||||| |||||||||||| | | Sbjct 169410 CCAAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTG 169469 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCC 34924 | | | ||||| || | || ||| || || || | ||||| ||| | | Sbjct 169470 GGATAGCTTCCTTATCTTGAATCTTTGCCTTTAC--AT--TGTCGATGGTGTCAGACGAC 169525 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | || ||||| || || ||||| ||||| || || || ||||| Sbjct 169526 TCAACTTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/230 (70%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 34754 CCCCTC--AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATA 34811 |||||| | ||| || || || || | ||| ||| ||||||||||||||||| | | Sbjct 170037 CCCCTCTTAGCCTAAGCACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCCA 170096 Query 34812 GGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCA 34871 | || |||| || | |||||| || || ||||||| ||||| |||||| | || | Sbjct 170097 AAGTCCGGCCATCTTCTAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGGA 170156 Query 34872 CCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCG 34927 || ||||| || | |||||| || || || |||| || ||| | ||| Sbjct 170157 TACCTTCCTTATCTTGAATTTTTGCCTTAAC--AT--TATCAATGGTGTCAGACGACTCA 170212 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || ||||| ||||| ||||||||||| || || |||||||| Sbjct 170213 ACCTCTAAAGTGATGGTTTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 170262 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||| ||||||||||| ||||| | | |||| |||| Sbjct 173412 AGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCT 173471 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||||| || ||||||||| | || | || ||||| || Sbjct 173472 TCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATC- 173530 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 || | ||||||| || || || | ||||| ||| | ||| || || | || | Sbjct 173531 TTGAATTTTTGTCTTAAC--AT--TGTCGATGGTGTCAGACGACTCAACCTCTAACGTGA 173586 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || ||||| ||||| || || |||||||| Sbjct 173587 TGGTTTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 34754 CCCCTC--AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATA 34811 |||||| | ||| || || ||||| | |||| || || || ||||| ||||| | | Sbjct 169809 CCCCTCTGAGCCTAAGCACAAGGTGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCA 169868 Query 34812 GGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCA 34871 | || |||| |||| |||||| || || ||||||| |||||||||||| | || | Sbjct 169869 AAGTACGACCATCTTCCAATTGCTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGTGGGA 169928 Query 34872 CCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACAT 34931 || |||||||| | ||| || || ||| | || | ||| | ||| || | Sbjct 169929 TACCTTCCTTGTCCTGTATCTTAGTCTTTACGTTGTCGATGGTGTCAGACGACTCAACCT 169988 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | | || ||||| || || ||||| ||||| || || |||||||| Sbjct 169989 CTAAAGTGATGGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 170034 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| |||| || ||||| || ||||| || || | ||| | || |||| Sbjct 159192 AGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCC 159133 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||||| ||||||| | |||||||| | || | ||||||||||| Sbjct 159132 TCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCT 159073 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||| || || |||| || || | ||| || || | || || Sbjct 159072 TGGATCTTCGCTTTCAC--AT--TATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGAT 159017 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || |||||||| ||||||||||| Sbjct 159016 AGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 >seq1915 Length=652484 Score = 84.2 bits (92), Expect = 1e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| | || ||||| || || || || ||||||||||| || || | Sbjct 300471 TTCCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAG 300530 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || ||| ||||| || |||||||| || || |||||||||| ||| |||||| | | Sbjct 300531 CAAGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGAG 300590 Query 34869 GCACCCCCTCCTTGTC 34884 | | || || ||||| Sbjct 300591 GGATGCCTTCTTTGTC 300606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683956219132