Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1915 165 1e-35 >seq1915 Length=652484 Score = 165 bits (182), Expect = 1e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| |||| ||||| |||| |||||||||||| | || ||| || | | Sbjct 300698 TGCAAATATTCGTAAAGACATTGACAGACAAAACAATTACTTTGGAAGTAAAAACTTCAG 300639 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||||||| | ||| || ||| ||||||||||| || || || |||| Sbjct 300638 ATACCGTTGCGAATGTAAAGAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGACCAAC 300579 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||||||||| ||| | || ||| || | | | | ||||| || | Sbjct 300578 AAAGACTGATCTTTGCAGGTAAGCAACTTGAGGATGATTGCATTCTTGCTGATTACAACA 300519 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||||||||||||| | ||| | ||||| |||||||| Sbjct 300518 TTCAGAAAGAATCGACTATCCATCTGGTACTCCGATTGAGAGGAGG 300473 Score = 150 bits (166), Expect = 3e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || || || || || ||||||||| | || |||||| | | Sbjct 299786 TGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATTACTTTGGAAGTAGAAACTTCAG 299727 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||||||| | |||||| ||| ||||||||||| || || || || | Sbjct 299726 ATACGGTTGCGAATGTAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCAGC 299667 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| ||||||||||| ||| | || ||| || | | | ||||| |||| Sbjct 299666 AAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAATA 299607 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||||||| ||||| | ||| | || || |||||||| Sbjct 299606 TTCAGAAAGAATCGACTCTCCATCTGGTACTTCGGTTGAGAGGAGG 299561 Score = 150 bits (166), Expect = 3e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| ||||| || || |||||||||||| | || |||||| | | Sbjct 300470 TGCAAATTTTCGTAAAGACATTGACGGGCAAAACAATTACTTTGGAAGTAGAAACTTCAG 300411 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||| |||| | ||| || ||| |||||||| || || || || |||| Sbjct 300410 ATACCGTTGCGAATATAAAGAGTAAGATTCAAGACAAAGAAGGTATCCCTCCAGACCAAC 300351 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| ||||||||||||||| | || ||| || | | | | ||||| || | Sbjct 300350 AAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATTGCATTCTTGCTGATTACAACA 300291 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||||||||| ||||| | ||| | ||| | |||||||| Sbjct 300290 TTCAGAAAGAATCGACCCTCCATCTGGTACTCCGACTGAGAGGAGG 300245 Score = 141 bits (156), Expect = 1e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| ||||| || || || ||||||||| | || |||||| | | Sbjct 300014 TGCAAATTTTCGTAAAGACATTGACGGGCAAGACAATTACTTTAGAAGTAGAAACTTCAG 299955 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| || ||| |||| | |||||| ||| ||||||||||| || || || || | Sbjct 299954 ATATCGTTGCGAATATAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCAGC 299895 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| ||||||||||| ||| | || ||| || | | | ||||| || | Sbjct 299894 AAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAACA 299835 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||||||||| ||||| | ||| | ||||| |||||||| Sbjct 299834 TTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGG 299789 Score = 129 bits (142), Expect = 9e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || || || || || ||||| || | || || ||| | | Sbjct 300242 TGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATGACATTAGAAGTGGAAACTTCAG 300183 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||| |||| | ||| || | | |||||||| || || || || |||| Sbjct 300182 ATACCGTTGCGAATATAAAGAGTAAGATTCTAGACAAAGAAGGTATCCCTCCAGACCAAC 300123 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| ||||||||||||||| | || ||| || | | | | ||||| || | Sbjct 300122 AAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATCGCATTCTTGCTGATTACAACA 300063 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||||||||| ||||| | ||| | ||||| |||||||| Sbjct 300062 TTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGG 300017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786144505265760