Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq486 143 2e-29 seq1915 138 9e-28 seq1364 109 4e-19 >seq486 Length=444201 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| | ||| || ||||| |||||||||||||| || || || | || ||| ||| Sbjct 170507 AGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGACCATCT 170566 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || ||||| ||| ||||||||| |||||| || ||||| ||||| |||||||| Sbjct 170567 TCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTTGTCC 170626 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | ||| ||| | || | || |||||| |||||| || | ||||| || Sbjct 170627 TG-AATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTACCTCTAATGTTATGGT 170685 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||| ||||| ||||| || ||||| Sbjct 170686 CTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || || ||||| || |||||||| |||||||| ||||||||| Sbjct 169124 CCTCCACGGAGACGTAGTACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCA 169183 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || || |||||| | ||||| ||||||||||| || || Sbjct 169184 AGGGTCCGCCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGG 169243 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| || || | || | || || || || || Sbjct 169244 ATTCCCTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCAATGGTATCTGATGACTCAACC 169303 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || || || || || || ||||||||||| |||||| Sbjct 169304 TCAAGTGTGATGGTCTTTCCTGTCAAAGTCTTAACAAATATTTGCATT 169351 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || ||||| ||||| ||||| ||||| |||| ||| ||| Sbjct 159196 ACGGAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACC 159137 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | ||||| || ||||| || || || || ||||| || Sbjct 159136 ATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTT 159077 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| ||| | || | ||||| ||| || || || || || || Sbjct 159076 GTCTTGGATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGAT 159017 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| | || || || || |||||||| Sbjct 159016 AGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| | ||| || ||||| ||||| ||||||||||| || || | || || ||| Sbjct 170051 AGCACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCCAAAGTCCGGCCATCT 170110 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| ||||| ||| | ||||| | ||| || || || || ||||| || || ||| Sbjct 170111 TCTAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGGATACCTTCCTTATCT 170170 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||||| || ||| | || | |||||||| || || || | ||| || || Sbjct 170171 TG-AATTTTTGCCTTAACATTATCAATGGTGTCAGACGACTCAACCTCTAAAGTGATGGT 170229 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| | ||| || || || |||||||| Sbjct 170230 TTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 170262 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || |||||||| ||||| |||||||| ||||| || | || ||| | Sbjct 173637 CGAAGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCA 173696 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || ||||| ||| | ||||| | ||||| || || || ||||| || || Sbjct 173697 TCTTCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTA 173756 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||||| || ||| | || | |||||||| || || || | || || Sbjct 173757 TCTTG-AATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGAT 173815 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| | || || || || |||||||| Sbjct 173816 TGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 173851 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 |||||||||||||| ||||| || || || | || ||| ||| || | ||| ||||| Sbjct 169838 GTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCCT 169897 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TT 29708 ||| | ||||| | |||||| || || || ||||| || ||||| ||| || || || || Sbjct 169898 GCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGT-ATCTTAGTCTT 169956 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 || | || | |||||||| || || || | ||| || ||||||||||| | || Sbjct 169957 TACGTTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCAGTGAGCGT 170016 Query 29769 TTTAACAAATATCTGCAT 29786 || || || |||||||| Sbjct 170017 CTTGACGAAAATCTGCAT 170034 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| ||||||||||| || || || || | |||||| ||| || | ||| Sbjct 169604 TGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGT 169663 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | ||||| | |||||| || || || || || || || ||||| | ||| Sbjct 169664 TTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTC 169723 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | |||||||| | || || || | ||| || ||||| || || Sbjct 169724 GCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGTG 169783 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || || || |||||||| Sbjct 169784 AGTGTCTTGACGAAAATCTGCAT 169806 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 |||||||||||||| ||||| || || || | || ||| ||| || | ||| ||||| Sbjct 170294 GTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCCT 170353 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TT 29708 || | ||||| | ||||| || || || ||||| || ||||| ||| || || || || Sbjct 170354 GCGAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGT-ATCTTAGTCTT 170412 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | |||||||| || || || | ||| || |||||||| || | || Sbjct 170413 TACATTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGGTGAGTGT 170472 Query 29769 TTTAACAAATATCTGCAT 29786 || || || || ||||| Sbjct 170473 CTTGACGAAAATTTGCAT 170490 >seq1915 Length=652484 Score = 138 bits (152), Expect = 9e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| || || |||| ||| || || |||||||| |||||||| ||||| || Sbjct 300244 TCCTCCTCTCAGTCGGAGTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGC 300303 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| | ||| || |||||||| || ||| | || | |||||| || || || || Sbjct 300304 AAGAATGCAATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGG 300363 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||| ||||||||||| ||| || | || | | | | || || || ||| ||||| Sbjct 300364 GATACCTTCTTTGTCTTG-AATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCTA 300422 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || |||||||| || || || || || || || |||||| Sbjct 300423 CTTCCAAAGTAATTGTTTTGCCCGTCAATGTCTTTACGAAAATTTGCATT 300472 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| || || |||| ||| | || |||||||| |||||||| ||||| || Sbjct 300472 TCCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAGC 300531 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| | ||| || ||||| || || ||| | |||| |||||| || || || || Sbjct 300532 AAGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGAGG 300591 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || ||||||||||| ||| || | || ||| | | || || || ||| || || Sbjct 300592 GATGCCTTCTTTGTCTTG-AATCTTACTCTTTACATTCGCAACGGTATCTGAAGTTTTTA 300650 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | ||| || |||||| | || || || || || ||||| ||||| Sbjct 300651 CTTCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCAT 300699 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| || || |||| ||| || || |||||||| ||||| || ||||| | Sbjct 299560 TCCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGA 299619 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | || ||| || ||||| || || ||| | || | ||||||||| || || || Sbjct 299620 AAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGG 299679 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || ||||||||||| |||||| | || ||| | | || || || ||| ||||| Sbjct 299680 GATGCCTTCTTTGTCTTG-AATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTA 299738 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || || ||||| || || || || || || || |||||| Sbjct 299739 CTTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCATT 299788 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| || | |||| ||| || || |||||||| |||||||| ||||| | Sbjct 299788 TCCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGA 299847 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | || ||| || ||||| || || ||| | || | ||||||||| || || || Sbjct 299848 AAGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGG 299907 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || ||||||||||| |||||| | || | | | | || | || ||| ||||| Sbjct 299908 GATGCCTTCTTTGTCTTG-AATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCTA 299966 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| || || ||||| || || || || || || || |||||| Sbjct 299967 CTTCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCATT 300016 >seq1364 Length=85398 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| ||| || |||| ||| ||||| ||||||||||| ||||| || || || Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || ||||| || || || | || | | ||||| || || || Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | ||| |||||| | || | ||||| || || || Sbjct 46430 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACC 46371 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || ||||| || || | ||| || ||||| |||||||| || Sbjct 46370 TCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCTT 46321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385208739854148