Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1239 86.0 8e-12 >seq1239 Length=862083 Score = 86.0 bits (94), Expect = 8e-12 Identities = 162/231 (70%), Gaps = 12/231 (5%) Strand=Plus/Plus Query 193401 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 193459 ||||||| || | ||||||||| || | || ||| ||||||||| |||| ||||| Sbjct 683499 GATGGTTTGAGGTTTGTTAAAGTTAGAATGAGATCTGTT-CGTATACCTCAAATTGGGGA 683557 Query 193460 TAAATTTTGTTCAGGA---ATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGA 193516 ||| ||| | ||| | |||| | | |||||||| || || | ||| | ||||| Sbjct 683558 TAAGTTTAG--CAGTAGACATGGTC-AGAAAGGAACAATAGGAATCACTTACACCCAAGA 683614 Query 193517 AGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTAT 193576 || ||||||| |||| ||| || || ||||||||| | |||||| || ||| Sbjct 683615 GGACATGCCATGGACAGTGGAAGGCATCACCCCTGATATTATTGTGAATCCACATGCTAT 683674 Query 193577 TCCATCCAGAATGACCATTAATCAAATTATTGCCACTG--TTATGGGCAAA 193625 ||| || ||||||||||| || |||||| | || | ||||||||| Sbjct 683675 TCCTTCTCGAATGACCATTGGACAGCTTATTG--AGTGCATCATGGGCAAA 683723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635159910303840