Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1915 118 1e-21 seq486 98.7 1e-15 >seq1915 Length=652484 Score = 118 bits (130), Expect = 1e-21 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || || | || | ||| | || |||||||| || ||||||||||| Sbjct 299789 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGAA 299848 Query 137245 AT--TGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | || || || || ||||| ||||| ||| |||| || | |||||| || || | Sbjct 299849 AGAATATGATCA--TCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGG 299906 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTC-CACCG-TGTCTGTGGGTTC 137360 | |||||||||||||| |||||| |||| | ||| || || | |||| | ||| Sbjct 299907 GGATGCCTTCTTTGTCTTGAATTTTACTCTTTA--TATTCGCAACGATATCTGAAGTTTC 299964 Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| | ||| | |||||||| |||||||| |||||||| |||||||| Sbjct 299965 TACTTCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCAT 300015 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || || | || | ||| || || |||||||| || ||||||||||| Sbjct 300473 CCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAGCA 300532 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || || ||||| ||||| ||| ||||||| | ||| || || ||||| Sbjct 300533 AGAATGCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGAGGG 300592 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| ||| || |||| | | || || |||| | || |||| Sbjct 300593 ATGCCTTCTTTGTCTTGAATCTTACTCTTTACATTCGCAACGGTATCTGAAGTTTTTACT 300652 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || ||| | |||||||| ||||||||||||||||| Sbjct 300653 TCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCAT 300699 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || || | || | ||| | || |||||||| || || |||||||| Sbjct 299561 CCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGAA 299620 Query 137245 AT--TGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | || || || || ||||| ||||| ||| |||| || | |||||| || || | Sbjct 299621 AGAATATGATCA--TCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGG 299678 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | |||||||||||||| |||||| |||| | | ||||| |||| | ||||| Sbjct 299679 GGATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTA 299738 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| | ||| | |||||||| ||||| || |||||||| |||||||| Sbjct 299739 CTTCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 299787 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 ||||||| || || | || | ||| | || |||||||| || ||||||||||| || Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300076 Query 137244 C-ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || | || || || ||||||||||| ||| |||| || | ||| || || |||| Sbjct 300077 AGAATGCGATCA--TCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAG 300134 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||||||||| ||| || |||| | | || || |||| | ||| | Sbjct 300135 GGATACCTTCTTTGTCTAGAATCTTACTCTTTATATTCGCAACGGTATCTGAAGTTTCCA 300194 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| | |||| |||||||| ||||| || |||||||| |||||||| Sbjct 300195 CTTCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || |||||||| || ||||||||||| | ||| || || ||||||||||| Sbjct 300275 GTCGATTCTTTCTGAATGTTGTAATCAGCAAGAATGCAATCATCCTCAAGTTGTTTACCT 300334 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | ||| || || ||||| || ||||||||||| ||| || ||| Sbjct 300335 GCAAAGATGAGTCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTGAATCTTACTCTTT 300394 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | | || || |||| | ||||||||| | ||| | || ||||| |||||||| Sbjct 300395 ATATTCGCAACGGTATCTGAAGTTTCTACTTCCAAAGTAATTGTTTTGCCCGTCAATGTC 300454 Query 137395 TTTACGAATATTTGCAT 137411 |||||||| |||||||| Sbjct 300455 TTTACGAAAATTTGCAT 300471 >seq486 Length=444201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||||| |||| ||||||||||| || ||||||||||| Sbjct 169124 CCTCCACGGAGACGTAGTACTAAGTGAAGGGTAGATTCTTTCTGAATGTTGTAATCCGCA 169183 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | ||||| || || || |||||| |||||| | ||||||||| || || Sbjct 169184 AGGGTCCGCCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCAGGTGGG 169243 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| || ||| |||| | || | || |||| | || || Sbjct 169244 ATTCCCTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCAATGGTATCTGATGACTCAACC 169303 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| || ||||| || || || ||||||||||| Sbjct 169304 TCAAGTGTGATGGTCTTTCCTGTCAAAGTCTTAACAAATATTTGCAT 169350 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || |||||||| |||||||| ||| || ||| | ||||| | || || || Sbjct 170522 GTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGACCATCTTCTAACTGCTTGCCT 170581 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| | |||| |||||||| || || || || ||||||||||| | | |||| ||||| Sbjct 170582 GCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTTGTC-CTGAATTTTAGTTTT 170640 Query 137335 AGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | | || | || || | | |||||| || | || | ||||| || || | ||| Sbjct 170641 AACATTATCGATTGTATCAGAAGATTCTACCTCTAATGTTATGGTCTTTCCCGTTAGTGT 170700 Query 137394 TTTTACGAATATTTGCAT 137411 |||||| || |||||||| Sbjct 170701 TTTTACAAAGATTTGCAT 170718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488530394049600