Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq486 113 4e-20 seq1364 107 2e-18 seq841 86.0 6e-12 >seq486 Length=444201 Score = 113 bits (124), Expect = 4e-20 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| |||||||||||||| || ||||||||| ||| || ||| | || || | ||| Sbjct 173649 TGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCA-TCTTCTAACTG 173707 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | ||||||||||| || ||||| |||||||| || ||| || Sbjct 173708 CTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATC-TTGAATTT 173766 Query 133577 TTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 ||| ||| | | || | ||||| | | ||| || || | |||| |||||||| | Sbjct 173767 TTGCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTTTTGCCAG 173826 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || |||||||||||||| Sbjct 173827 TGAGCGTCTTGACGAAAATCTGCAT 173851 Score = 111 bits (122), Expect = 2e-19 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || ||| ||| ||| | || || | |||||| || Sbjct 173427 GTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCA-TCTTCCAACTGCTTACC 173485 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 || | || | ||||||||||| || ||||| |||||||| || ||| ||||| || Sbjct 173486 TGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATC-TTGAATTTTTGTCT 173544 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | | ||| || || | |||| |||||||||||| || | Sbjct 173545 TAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTTGCCGGTGAGCG 173604 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 173605 TCTTGACGAAAATCTGCAT 173623 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| |||||||||||| || |||||||| ||| ||| ||| ||| | || || | ||| Sbjct 169604 TGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCA-TCTTCCAACTG 169662 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| || | || | || |||||||| || |||||||||||||| || ||| || Sbjct 169663 TTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTT 169722 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | || | ||||| | ||| || || | |||| |||||| ||||| Sbjct 169723 CGCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGT 169782 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||||||||| Sbjct 169783 GAGTGTCTTGACGAAAATCTGCAT 169806 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| |||||| ||||| || || ||||| ||| ||| || ||| | || || | || Sbjct 170288 TGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCA-TCTTCCAATTG 170346 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || | ||||||||||| || ||||| ||||||||||| ||||| Sbjct 170347 CTTGCCTGCGAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTT 170406 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | || | ||||| | | ||| || || | |||| |||||||||||| Sbjct 170407 AGTCTTTACATTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGGT 170466 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||| ||||| Sbjct 170467 GAGTGTCTTGACGAAAATTTGCAT 170490 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || || |||||||| | | || ||| | ||||| | |||||| || Sbjct 158949 GTGGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCA-TCCTCCAACTGCTTCCC 158891 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||||||||| || || |||||||| ||||| ||| Sbjct 158890 AGCAAAGATCAACCTCTGCTGGTCGGGAGGAATTCCCTCCTTGTCTTGAATCTTCGCCTT 158831 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | |||||| || | |||| ||| || || |||||||| Sbjct 158830 CACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGTCTTACCAGTCAGAGT 158771 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||| |||||||| Sbjct 158770 CTTTACGAAGATCTGCAT 158753 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || || || || |||||||| | | || ||| | ||||| | Sbjct 159186 AAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCA-TCCTCCAA 159128 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || |||||||||||||||||| || |||||||| ||| Sbjct 159127 CTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGAT 159068 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || | | |||| ||||| | | ||| || || | |||| || ||||| Sbjct 159067 CTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACCTCCAGTGTGATAGTCTTGCC 159008 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| |||||||| |||||||| Sbjct 159007 AGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| ||||||||||||||| || ||||| ||| ||| || ||| | || || | || Sbjct 169376 TGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCCAAAGTACGACCA-TCTTCCAATTG 169434 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || | || |||||||| || ||||| ||||||| || ||||| Sbjct 169435 CTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATAGCTTCCTTATCTTGAATCTT 169494 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | ||| | | || | ||||| | | ||| || || | |||| |||||||||||| Sbjct 169495 TGCCTTTACATTGTCGATGGTGTCAGACGACTCAACTTCTAAAGTGATGGTTTTGCCGGT 169554 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||| ||||| Sbjct 169555 GAGCGTCTTGACGAAAATTTGCAT 169578 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| |||||| ||||| || || ||||| ||| ||| || ||| | || || | || Sbjct 169832 TGTAAGGTGGATTCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCA-TCTTCCAATTG 169890 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | || |||||||| || ||||| ||||||||||| ||||| Sbjct 169891 CTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTT 169950 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | || | ||||| | | ||| || || | |||| ||||||||| || Sbjct 169951 AGTCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCAGT 170010 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||||||||| Sbjct 170011 GAGCGTCTTGACGAAAATCTGCAT 170034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| |||||||||||||| || || || ||| ||| || | | | || || | | Sbjct 170059 ATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCCAAAGTCCGGCCA-TCTTCTAATT 170117 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || || ||||| || ||||| |||||||| || ||| | Sbjct 170118 GCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGGATACCTTCCTTATCT-TGAATT 170176 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||||| | | | | |||| ||||| | | ||| || || | |||| |||||| || Sbjct 170177 TTTGCCTTAACATTATCAATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTTCCA 170236 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 170237 GTGAGGGTCTTGACGAAAATCTGCAT 170262 >seq1364 Length=85398 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || ||||| || || ||||| ||| | | ||| |||||| || ||||| || Sbjct 46520 GTCGATTCTTTTTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCCTCCAGTTGCTTCCCG 46461 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||||||||| || ||||||| |||| Sbjct 46460 GCGAAGATAAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATCTTTGCCTTG 46401 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | |||||| | || ||| || |||| || | ||||| || || || || Sbjct 46400 ACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTAATCGTTTTCCCCGTAAGGGTC 46341 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 46340 TTCACAAAGATCTGCAT 46324 >seq841 Length=1035533 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||| ||||| ||||| || || | | ||| ||| ||||| |||||||| | Sbjct 649959 GTTGACTCCTTCTGAATATTATAGTCAGCAA--GTGTACGTCCATCCTCAAGCTGCTTCC 650016 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | ||||||||||| || ||||| ||||| ||||| ||||| || Sbjct 650017 CGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGAATCTTGGCCT 650076 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||| || | | || || |||| ||||| || || || || || | Sbjct 650077 TCACGTTATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGG 650136 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| || || ||||||||| Sbjct 650137 TTTTCACAAAGATCTGCATG 650156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483407336730720