Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1412 102 2e-16 seq59 102 2e-16 seq759 93.3 1e-13 >seq1412 Length=772440 Score = 102 bits (112), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||||| ||| || ||||| |||||| | ||||| || |||||||||| Sbjct 274486 GACATTTGATTGATGGGGACATTGTTCTTTTCAATCGCCAACCTAGTCTTCATAAAATGT 274545 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAAT--GTAAG 305424 |||| |||| |||| | |||| || | | | || ||||| |||||| || | Sbjct 274546 CTATCATGGGACATAGAATCAAGATAATGCCATATTCCACTTTTCGTTTAAATTTGTCTG 274605 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || || | ||||||||||| |||||||||||||| || ||||| |||||||| || || Sbjct 274606 TGACTG--CTCCTTATAATGCTGATTTTGATGGAGACGAGATGAACATGCATGTTCCCCA 274663 Query 305485 ATCAAAGGTTACAATGACTGAA 305506 |||| | | |||| | | ||| Sbjct 274664 ATCATATGAAACAAAGGCAGAA 274685 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 304938 AGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGG-TAAA 304996 |||| | ||| | ||||| |||| | ||| ||| | |||| | |||||| |||| Sbjct 273915 AGGCTACACAACGTTCTGGACGACCCATCAAGTCTAT-ATGCAATAGACTAAAGGCTAAA 273973 Query 304997 GAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTA 305056 || ||||| || |||| ||| | ||||| || |||||||||||| ||| ||| || Sbjct 273974 GAAGGTCGAATCAGAGGCAATTTGATGGGGAAGCGTGTTGATTTTTCTGCTCGAACGGTC 274033 Query 305057 ATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AATTGCTTT 305115 || || || || | ||||| | || |||||||||||||||| || || ||||| | Sbjct 274034 ATAACTCCAGACCCAATAATTAATATTGATGAATTAGGAGTTCC-ATGGAGTATTGCCCT 274092 Query 305116 AAAACTAACATTTCCAGAGAAAGT 305139 || |||| |||||||| | ||| Sbjct 274093 TAATTTAACGTTTCCAGAAACAGT 274116 >seq59 Length=545433 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131862 TTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTT 131921 |||| ||||||||||| || ||||| ||||| || || || |||||||| || || | Sbjct 359296 TTGTGGCTTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGCTTCTGTGCGATATTCT 359237 Query 131922 GGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAG 131981 |||| ||||| || || ||||||||||||| | || ||||| |||| || ||||||| Sbjct 359236 GGCTGAAGAAACGCGGTCTGATGCCTGGACTGACCTTCTCCAACGAATTGATATCGAGAG 359177 Query 131982 ATGAAG 131987 | |||| Sbjct 359176 ACGAAG 359171 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || |||||||| || ||||| ||||| || || || ||||||||| || || ||| Sbjct 337811 GTGGCCTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGTTTCTGTGCGATATTCTGG 337870 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 | || || ||||| ||||||||||| | | || ||||| |||| || |||||||| Sbjct 337871 TTAAAAAAACGTGGTCTGATGCCTGGATTGACCTTCTCCAACGAATTGATATCGAGAGAC 337930 Query 131984 GAAG 131987 |||| Sbjct 337931 GAAG 337934 >seq759 Length=1097083 Score = 93.3 bits (102), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 12/185 (6%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| ||||| ||||| ||||| || ||| | |||||| || ||||||||||| Sbjct 868248 CATTTAAATGATGGTGATTTTGTTCTTTTTAATCGTCAACCAAGTCTTCATAAAATGTCC 868189 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA------TGTA 305422 || |||| || | |||| || | | | || ||||| ||||| |||| Sbjct 868188 ATCATGGGACACCGAATCAAGATAATGCCATATTCAACTTTTCGTTTAAACTTGTCTGTA 868129 Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 | |||| || || ||||| ||||||||||||||||||||||| |||||||| || Sbjct 868128 ACTGCT------CCGTACAATGCTGATTTTGATGGAGATGAAATGAACATGCATGTTCCC 868075 Query 305483 CAATC 305487 ||||| Sbjct 868074 CAATC 868070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186778920945108