Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq486 131 1e-25 seq1364 111 1e-19 seq841 93.3 3e-14 seq1915 86.0 4e-12 >seq486 Length=444201 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||||| || |||||| |||||| || |||||||| || | Sbjct 173395 CACCACCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAG 173454 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||||| | || ||||| || || || ||||| |||||||||||||| ||| | | Sbjct 173455 CCAAAGTGCGACCATCTTCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTG 173514 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| || || |||||| ||| | ||||| ||| | |||||| || || Sbjct 173515 GGATACCTTCCTTATCTTGAATTTT-TGTCTTAACATTGTCGATGGTGTCAGACGACTCA 173573 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | |||||| ||||| || || | ||| || || || ||||||||| Sbjct 173574 ACCTCTAACGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATCTGCATA 173624 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | | | ||| | |||||| ||| ||||||||| |||||||| |||| Sbjct 170491 ACCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGC 170550 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || || || || || || ||||| ||||| || ||||| ||| |||| Sbjct 170551 CAATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGG 170610 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| |||| ||||| || | || || ||||| | Sbjct 170611 GATACCTTCTTTGTCCTGAATTTT-AGTTTTAACATTATCGATTGTATCAGAAGATTCTA 170669 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || |||| |||||||||||||| ||||| Sbjct 170670 CCTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | || | ||| | ||||| ||| |||||| || ||||||||||||| Sbjct 173624 ACCCCCTCTGAGTCGAAGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGC 173683 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || || || || || ||||| |||||||||||||| ||| | || Sbjct 173684 CAAAGTACGACCATCTTCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGG 173743 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || |||||| || | ||||| ||| | |||||| || || | Sbjct 173744 GATACCTTCCTTATCTTGAATTTT-TGCCTTAACATTGTCGATGGTGTCAGACGACTCAA 173802 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||| ||||| || || | ||| || || || |||||||| Sbjct 173803 CCTCTAACGTGATTGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 173851 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | ||| | ||||| ||| |||||| || |||||||| |||| Sbjct 169352 CCACCTCTCAAACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCC 169411 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||||||| ||||| ||||| ||||| || ||||| ||| | || Sbjct 169412 AAAGTACGACCATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGG 169471 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | | |||| || || ||| || || | |||| ||| | |||||| || || || Sbjct 169472 ATAGCTTCCTTATCTTGAATCTT-TGCCTTTACATTGTCGATGGTGTCAGACGACTCAAC 169530 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || | ||| || || || || |||||| Sbjct 169531 TTCTAAAGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCATA 169579 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | || | ||||||||| || ||||| ||||||||||| | Sbjct 158523 CCTCCTCTCAAACGAAGAACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 158464 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || ||||| || || |||||||| ||||| | |||||| || | || Sbjct 158463 AGTGTACGACCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 158404 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| |||| || | ||||| || ||||| Sbjct 158403 ATTCCCTCCTTGTCTTGGATCTTAGCTTTC-ACATTATCAATTGTGTCCGAAGACTCCAC 158345 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | ||||| |||||||||||||| Sbjct 158344 CTCTAAAGTGATGGTCTTACCGGTGAGAGTTTTCACAAAGATCTGCAT 158297 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | || | ||| || ||| || ||||| ||||||||||| | Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || || || ||||| ||||| | |||||| || | || Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| ||| ||| |||| ||| | ||||| ||| ||||| Sbjct 158859 ATTCCCTCCTTGTCTTGAATCTTCGCCTTC-ACATTGTCAATTGTGTCCGATGACTCCAC 158801 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || ||||| ||||||||||| Sbjct 158800 CTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | || | ||| || ||| || || || || || ||||| | Sbjct 158751 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTCTGGATATTATAATCAGCA 158692 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || || |||||||||||||| | |||||| || | || Sbjct 158691 AGGGTACGACCATCCTCCAACTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGAGGG 158632 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| ||| ||| |||| ||| | ||||| ||| ||||| Sbjct 158631 ATTCCCTCCTTGTCTTGAATCTTCGCCTTC-ACATTGTCAATTGTGTCCGATGACTCCAC 158573 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || ||||| ||||||||||| Sbjct 158572 CTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158525 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||| ||||| || ||||| ||||||||||| | Sbjct 159207 CCACCACGAAGACGGAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 159148 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || ||||||||||| ||||| | |||||| || | || Sbjct 159147 AGGGTCCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGG 159088 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| ||||| ||| ||| ||||| || || || Sbjct 159087 ATTCCCTCCTTGTCTTGGATCTTCGCTTTCA-CATTATCAATTGTGTCCGAAGACTCAAC 159029 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || ||||| ||||||||||| Sbjct 159028 CTCCAGTGTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| |||||||| |||| | || || | || |||||||| || || || || Sbjct 170300 TCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCCTGCGAAG 170359 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||||||||| ||| | || | |||||| ||||| || || || | |||| Sbjct 170360 ATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTT-AGTCTTTACATT 170418 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| || || || || | ||||| ||||| || || | || || || Sbjct 170419 GTCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGGTGAGTGTCTTGAC 170478 Query 33738 AAAGATCTGCATA 33750 || || |||||| Sbjct 170479 GAAAATTTGCATA 170491 >seq1364 Length=85398 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || |||| ||| | |||| ||| || || |||||||| |||||||| |||| Sbjct 46552 CACCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGG 46493 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| |||||| |||| |||| ||| || ||||| || || | ||||||||| ||| | | Sbjct 46492 CGAGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTG 46433 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| || || || || || | |||| ||| | ||||| || || Sbjct 46432 GGATGCCTTCCTTATCCTGGATCTT-TGCCTTGACATTGTCGATCGTGTCCGAGGACTCA 46374 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || |||||||| || || | || || |||||||||||||| Sbjct 46373 ACCTCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 46324 >seq841 Length=1035533 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || ||||| ||| || || || || || || | ||||| ||| | || || Sbjct 649947 ACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCATCCTCA 650006 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || ||||| || |||||||||||||| ||| | || | ||||||||||| | Sbjct 650007 AGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 650066 Query 33661 ATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 || || |||| || | || || ||||| || || | |||||||| || Sbjct 650067 ATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTC 650126 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 || |||| ||||| |||||||||||||| ||||| Sbjct 650127 CCCGTTAGGGTTTTCACAAAGATCTGCATGTTTGGT 650162 >seq1915 Length=652484 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| || | |||| ||| || || ||||| || ||||||||||| | Sbjct 300017 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGCA 300076 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| || || || | |||||| || ||||| || | | || || ||| | || Sbjct 300077 AGAATGCGATCATCCTCAAGTTGTTTACCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGG 300136 Query 33643 ACACCTTCTTTGTCGGCAAT-TTTCTGTTTCAACATAGTC---ACGGTGTCGCTTGATTC 33698 | |||||||||||| ||| || || ||| ||| || ||||| || | ||| Sbjct 300137 ATACCTTCTTTGTCTAGAATCTTACTCTTT----ATATTCGCAACGGTATCTGAAGTTTC 300192 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || || || || || ||||| ||||| || || ||||| Sbjct 300193 CACTTCTAATGTCATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCAT 300243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695074453760