Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq486 102 8e-17 >seq486 Length=444201 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||||||||| || || || |||||| | ||| ||||| | | Sbjct 173430 GACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTCCAACTGCTTACCTGCA 173489 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||| || ||||| || || ||||| ||||| | | ||||||| | ||| Sbjct 173490 AAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATC-TTGAATTTTTGTCTTAAC 173548 Query 132050 -TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | || || | || ||| || || | ||| | ||||| || || || || || Sbjct 173549 ATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTTGCCGGTGAGCGTCTT 173608 Query 132109 TATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 173609 GACGAAAATCTGCAT 173623 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||| ||| || ||||| |||||| | ||| || || | | Sbjct 173658 GACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCATCTTCTAACTGCTTGCCTGCA 173717 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||| || ||||| || || ||||| ||||| ||||||| || | Sbjct 173718 AAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTTTGCCTTAACA 173777 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||| || || | ||| | ||||| ||||| || || || Sbjct 173778 TTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTTTTGCCAGTGAGCGTCTTG 173837 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 173838 ACGAAAATCTGCAT 173851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||| |||||| || || || |||||| | || || || | | Sbjct 170069 GACTCTTTCTGAATGTTATAGTCGGCCAAAGTCCGGCCATCTTCTAATTGCTTGCCTGCA 170128 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || ||||| ||||| || || ||||| ||||| ||||||| || | Sbjct 170129 AAGATCAAGCGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTTTGCCTTAACA 170188 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || ||| || || | || | ||||| ||||| || || || Sbjct 170189 TTATCAATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTTCCAGTGAGGGTCTTG 170248 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 170249 ACGAAAATCTGCAT 170262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||||| | | |||||||||||||||||||||||| || ||||| |||||| | ||| Sbjct 170515 ATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCCAATGTACGACCATCTTCTAACTG 170574 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 || || | | | || | || || || ||||| || || |||||||| || | | ||| Sbjct 170575 CTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGGATACCTTCTTTGTC-CTGAATTT 170633 Query 132040 TTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAG 132098 | |||| ||| | || | ||||| | | || || || | || | || || || | Sbjct 170634 TAGTTTTAACATTATCGATTGTATCAGAAGATTCTACCTCTAATGTTATGGTCTTTCCCG 170693 Query 132099 TCAGAGTTTTTATGAAAATCTGCAT 132123 | || ||||||| || || ||||| Sbjct 170694 TTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131921 TGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGT 131980 |||| | | |||||||||||||| ||||||||| || || || |||||| | |||| Sbjct 169604 TGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCCAACTGT 169663 Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 || || | | |||| | || || || ||||| || |||||||| ||||| ||||| Sbjct 169664 TTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATTTTC 169723 Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 || | | || | || || | | ||| || || | || | ||||| || || Sbjct 169724 GCCTTAACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTTTCCGGTG 169783 Query 132101 AGAGTTTTTATGAAAATCTGCAT 132123 || || || | |||||||||||| Sbjct 169784 AGTGTCTTGACGAAAATCTGCAT 169806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597926378080