Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1915 107 2e-18 seq486 86.0 5e-12 >seq1915 Length=652484 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || || || ||||| |||||||| ||||| ||||| |||| | Sbjct 299788 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATTACTTTGGAAGTAGAAACTTC 299729 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | |||| | || || |||||| |||||||||||| | ||| ||| || Sbjct 299728 AGATACGGTTGCGAATGTAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACCA 299669 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||| || || | ||| || || ||| | || ||| | | | | | |||||||| Sbjct 299668 GCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACAA 299609 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || |||||||| || || ||| | ||| | |||| |||||||| Sbjct 299608 TATTCAGAAAGAATCGACTCTCCATCTGGTACTTCGGTTGAGAGGAGGA 299560 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || || |||||||| |||||||| ||||| | ||| |||| | Sbjct 300016 AATGCAAATTTTCGTAAAGACATTGACGGGCAAGACAATTACTTTAGAAGTAGAAACTTC 299957 Query 106319 CGATTCTGTTGGCCAAGTGAAACAA-AAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 ||| |||| | || ||| | |||||| |||||||||||| | ||| ||| | Sbjct 299956 AGATATCGTTG-CGAATATAAAGAGTAAAATTCAAGACAAAGAAGGCATCCCCCCTGACC 299898 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 | ||||| || || | ||| || || ||| | || ||| | | | | | ||||||| Sbjct 299897 AGCAAAGACTCATCTTTGCAGGTAAGCAACTTGAGGATGATCATATTCTTTCTGATTACA 299838 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||| || |||||||| || || ||| | ||| | | || |||||||| Sbjct 299837 ACATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGGA 299788 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || || |||||||| ||||| || ||||| ||||| |||| | Sbjct 300472 AATGCAAATTTTCGTAAAGACATTGACGGGCAAAACAATTACTTTGGAAGTAGAAACTTC 300413 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAA-ATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 ||| | |||| | || ||| | || ||| ||||||||||| | || || | Sbjct 300412 AGATACCGTTG-CGAATATAAAGAGTAAGATTCAAGACAAAGAAGGTATCCCTCCAGACC 300354 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| || || | ||| || |||||| | || ||| | | | | | ||||||| Sbjct 300353 AACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATTGCATTCTTGCTGATTACA 300294 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||| || |||||||| || || ||| | ||| | | | |||||||| Sbjct 300293 ACATTCAGAAAGAATCGACCCTCCATCTGGTACTCCGACTGAGAGGAGGA 300244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || || || ||||| |||||||| || || | ||| ||| | Sbjct 300244 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATGACATTAGAAGTGGAAACTTC 300185 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAA-ATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 ||| | |||| | || ||| | || ||| ||||||||||| | || || | Sbjct 300184 AGATACCGTTG-CGAATATAAAGAGTAAGATTCTAGACAAAGAAGGTATCCCTCCAGACC 300126 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| || || | ||| || |||||| | || ||| | | | | | ||||||| Sbjct 300125 AACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATCGCATTCTTGCTGATTACA 300066 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||| || |||||||| || || ||| | ||| | | || |||||||| Sbjct 300065 ACATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGGA 300016 >seq486 Length=444201 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| |||||| | || || |||||||| || | || |||| | Sbjct 170718 ATGCAAATCTTTGTAAAAACACTAACGGGAAAGACCATAACATTAGAGGTAGAATCTTCT 170659 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | || ||| |||||| ||||||||||| | || || || Sbjct 170658 GATACAATCGATAATGTTAAAACTAAAATTCAGGACAAAGAAGGTATCCCGCCAGACCAG 170599 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| ||||| || ||||||||| | || ||| ||| |||||| Sbjct 170598 CAACGATTGATATTTGCAGGCAAGCAGTTAGAAGATGGTCGTACATTGGCCGACTACAAC 170539 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||| || || |||||| | || | ||| || |||| || Sbjct 170538 ATTCAAAAAGAGTCCACCCTACATCTTGTGCTTAGGCTAAGAGGGGG 170492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402318675242624