Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq59 197 2e-44 >seq59 Length=545433 Score = 197 bits (218), Expect = 2e-44 Identities = 368/529 (70%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 |||||||||||||||| | |||| ||||||| || || ||||| ||||||||||| || | Sbjct 337402 GATATGGGAAATGTACAAGAAAG-CCGAGGCGTCTTTCTGGACGGCCGAGGAGGTAGATC 337460 Query 1455835 TCGGCGCC-GACACGGTCCACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATC 1455890 | | | | || || || |||| | || | | || |||||||||||||||| Sbjct 337461 T-GTCTCAAGATACTCGTCATTGGGAACATACTCTCACCAACAACGAGCGCCATTTCATT 337519 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 | ||||| ||||| || ||| || || |||||| ||||| ||||| ||||||| Sbjct 337520 ACTCACGTTCTCGCTTTCTTT-GCGGCGTCCGATGGTATCGTCCTTGAGAATCTGGCCGT 337578 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || |||||||||||||| | |||| |||||| ||| ||||| || |||||||| Sbjct 337579 TCGATTCATGAAAGAGGTCCAGGTCTCAGAAGCACGTGCGTTCTACGGATTTCAGATCGC 337638 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||| || || || | ||| || || | || ||| |||| || | Sbjct 337639 TATTGAGAACATTCATTCCGAGATGTACAGTCTTCTCCTGGAGTGTTACATCAAAGATTC 337698 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | ||||| | || |||| |||| | || || | || | || | || ||||| Sbjct 337699 CGCAGAGAAAACTCGTCTATTTCACGCCGTGGAGACTATTCCTTGTGTAAAAAAGAAGGC 337758 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGT 1456189 || ||||||||| |||||| || || | | || |||| || ||| || |||| Sbjct 337759 GGATTGGGCGATGCGATGGATCGAC--GGTGCG----GAGTCTTTCGCTGAGAGGATCGT 337812 Query 1456190 CGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | |||||| |||| || || || |||||||| || |||||||| || || || ||| | Sbjct 337813 GGCCTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGTTTCTGTGCGATATTCTGGTT 337872 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTAT 1456297 || || || || || ||||| || || ||| ||||||||| || Sbjct 337873 AAAAAAACGTGGTCTGATGCCTGG-ATTGACCTTCTCCAACGAATTGAT 337920 Score = 196 bits (216), Expect = 7e-44 Identities = 350/504 (69%), Gaps = 13/504 (3%) Strand=Plus/Minus Query 1455777 TATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTC 1455836 ||||||| ||||| | |||| | || || ||||||||||| ||||| ||||| || || Sbjct 359701 TATGGGAGATGTATAAGAAAG-CTGAAGCGTCCTTTTGGACGGCCGAAGAGGTTGATCTG 359643 Query 1455837 GGCGCCGACACGGTCCACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 | || ||| ||||||| | || | |||| ||||||| || ||||| | Sbjct 359642 TCCCATGATACGCGTCACTGGGAACACACCCTTACCGACAACGAGCGTCACTTCATTACT 359583 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||||| ||||| || ||| || || ||| |||||||| |||||| ||||||| || Sbjct 359582 CACGTTCTCGCTTTCTTT-GCGGCATCCGACGGCATCGTTCTCGAGAATCTGGCCGTTCG 359524 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || |||||||||||||| | | |||||||| ||| || || || |||||||| || Sbjct 359523 ATTCATGAAAGAGGTCCAGGTCTCGGAGGCACGCGCGTTCTATGGATTTCAGATCGCTAT 359464 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 ||| |||||||| || || | ||| || || | || ||| |||| ||| Sbjct 359463 CGAGAACATCCATTCAGAGATGTACAGTCTTCTATTGGAGTGTTACATCAAAGACAACAC 359404 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||| | ||||| | |||| | || || | || | |||| ||||||||| || Sbjct 359403 AGAGAAAACTCGTCTCTTCCACGCCGTGGAGACTATTCCCTGCGTGAAGAAAAAGGCGGA 359344 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAG-GGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 ||||||||| |||||| | || | || || ||||| ||| || | || | Sbjct 359343 TTGGGCGATGCGATGGATC--GATGGTGCGGAGTC----TTTTGCTGAGAGGATTGTGGC 359290 Query 1456193 CTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||| |||| || || || |||||||| || || ||||| || || || ||||| || Sbjct 359289 TTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGCTTCTGTGCGATATTCTGGCTGAA 359230 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| ||||| || ||||| || || Sbjct 359229 GAAACGCGGTCTGATGCCTGGACT 359206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177596305304936