Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq486 125 6e-24 seq1364 107 2e-18 seq841 95.1 1e-14 >seq486 Length=444201 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592 ||||| ||| |||||||| ||||||||||| || | || || | || |||| ||| Sbjct 158500 ATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCAAGTGTACGACCATCCTCCAACTG 158441 Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||| || ||||| ||||||| ||||||||| | ||| | | ||||||||| |||||| Sbjct 158440 CTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGGATCTT 158381 Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 |||| | | | | ||||| || |||||||| | ||||| || ||||| || Sbjct 158380 AGCTTTCACATTATCAATTGTGTCCGAAGACTCCACCTCTAAAGTGATGGTCTTACCGGT 158321 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 | |||||||||||| |||||||| Sbjct 158320 GAGAGTTTTCACAAAGATCTGCAT 158297 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| ||||||||||| || | ||| || | || |||| |||||| || ||||| Sbjct 158943 TCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAG 158884 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | ||||| | ||||||||| ||||| ||||| | | Sbjct 158883 ATCAACCTCTGCTGGTCGGGAGGAATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATTG 158824 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || |||||||| | ||||| || ||||| |||| ||| || || Sbjct 158823 TCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACG 158764 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 158763 AAGATCTGCAT 158753 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | ||| |||||||| ||||||||||| || Sbjct 159207 CCACCACGAAGACGGAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 159148 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||| |||||| || ||||| ||||||| ||||||||| | ||| Sbjct 159147 AGGGTCCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGG 159088 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| |||| | | | | ||||| || || ||| Sbjct 159087 ATTCCCTCCTTGTCTTGGATCTTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAACC 159028 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||| ||| || || || |||||||| Sbjct 159027 TCCAGTGTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||||||||| || | ||| ||| | || || |||||||| || ||||| Sbjct 169160 TCTTTCTGAATGTTGTAATCCGCAAGGGTCCGCCCATCTTCAAGCTGCTTTCCAGCAAAG 169219 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||| || | || | | ||||||||| ||||||| ||| | ||| Sbjct 169220 ATCAACCTTTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTTA-CGTT 169278 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || || || ||||| | ||||| || || || |||||||| || || Sbjct 169279 GTCAATGGTATCTGATGACTCAACCTCAAGTGTGATGGTCTTTCCTGTCAAAGTCTTAAC 169338 Query 35725 AAATATCTGCATTC 35738 |||||| ||||||| Sbjct 169339 AAATATTTGCATTC 169352 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593 |||| ||| ||| || |||||||||||||||||||| || || | || || | |||| Sbjct 173649 TGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGACCATCTTCTAACTGC 173708 Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653 || || ||||| ||||| ||||||||||| | || | | ||||| | | ||| ||| Sbjct 173709 TTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTAT-CTTGAATTTT 173767 Query 35654 TG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || ||| | | | | | ||||| ||| || ||||| | |||||| ||||| || || Sbjct 173768 TGCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATTGTTTTGCCAGT 173827 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 | || || || || |||||||| Sbjct 173828 GAGCGTCTTGACGAAAATCTGCAT 173851 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || ||||| || || | || |||| ||||||||| ||||| Sbjct 173432 CTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCTTCCAACTGCTTACCTGCAAA 173491 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 ||||| ||||||||||| | || | | ||||| | | ||| ||||| ||| | | Sbjct 173492 GATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTAT-CTTGAATTTTTGTCTTAACAT 173550 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| ||| || ||||| | |||||| ||||| || || | || || | Sbjct 173551 TGTCGATGGTGTCAGACGACTCAACCTCTAACGTGATGGTTTTGCCGGTGAGCGTCTTGA 173610 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 173611 CGAAAATCTGCAT 173623 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || | || ||| | ||| | ||||| || ||| |||||||||||||| |||||| Sbjct 170492 CCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCC 170551 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || | |||||| || ||||||||||| || |||||||| | || Sbjct 170552 AATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGG 170611 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||||| ||| ||| | || | | | | | || || ||||| || Sbjct 170612 ATACCTTCTTTGTCC-TGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTAC 170670 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | || || || || ||||| | ||||| ||||| || ||||| Sbjct 170671 CTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| |||||||| || || | || |||| ||||| || || || Sbjct 170300 TCTTTTTGGATGTTGTAGTCGGCCAAAGTACGACCATCTTCCAATTGCTTGCCTGCGAAG 170359 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | || | | ||||||||| ||||| ||| | | | Sbjct 170360 ATCAAACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGTCTTTACATTG 170419 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| ||| || ||||| | ||||| ||||| || || | || || || Sbjct 170420 TCGATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTTTGCCGGTGAGTGTCTTGACG 170479 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 170480 AAAATTTGCAT 170490 >seq1364 Length=85398 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||| ||| | ||| || ||||| |||||||| ||||| | || || |||| ||| Sbjct 46532 ACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCCTCC 46473 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || || || || | ||||||||||| | || | || ||||| ||| | Sbjct 46472 AGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 46413 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 |||||| ||| | | | | | |||||| || || ||||| | || |||||||| Sbjct 46412 ATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTAATCGTTTTC 46353 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || |||||||| |||||||| Sbjct 46352 CCCGTAAGGGTCTTCACAAAGATCTGCAT 46324 >seq841 Length=1035533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| || || || || | || || | || || |||||||| || || || Sbjct 649964 CTCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAA 650023 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | | || |||||| ||||| ||||| | Sbjct 650024 GATCAAACGCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTT 650083 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||| || ||||| ||||| | |||||||| || ||||| | |||||||| Sbjct 650084 ATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 650143 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 650144 AAAGATCTGCAT 650155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450781045398240