Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq59 205 1e-47 seq2201 127 3e-24 >seq59 Length=545433 Score = 205 bits (226), Expect = 1e-47 Identities = 581/882 (66%), Gaps = 27/882 (3%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| |||||||| || || ||||||||||| ||||| ||||| || | ||| || || Sbjct 338248 TTTCTGGTATTCTCCGACCCGTTTCTCGAAGAAATTTGTTTTCCCCTGCAAAGAAATCAA 338189 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| ||||||| ||||| | |||| || ||| | | || | || | Sbjct 338188 CTCCATCCAATCAAAAGGATTCGACGCATCGTACAACTTTCCATACCCCAGAGCTCCGAG 338129 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA- 39503 || | ||| || || ||||| |||||| |||||| ||| |||||||| | | Sbjct 338128 TAACCGATCCGCGACGAATTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACCAA 338069 Query 39504 -GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 | || || ||||| || | || ||| | |||||||| ||||| || | || Sbjct 338068 AGCGCAA--GGAAGAGCATCGCAGACGAATTCTCTCTCGATGTCAACGGCGTCCGATACG 338011 Query 39563 ATC-----GATGTTACTACCTCA-TCA-CTCGGTGGATGCAATAAATGTTTAAACATTAA 39615 ||| ||| || || |||| ||| || ||| | || | | | || || | Sbjct 338010 ATCCCACGGATCTT-CT-CCTCGCTCAGCTTCGTG--TTCAGAAGACCGTAAAGCA---A 337958 Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||| ||||| || || || || ||||| || |||||||| || || || | Sbjct 337957 ACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAA 337898 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 ||||||||| |||||||| ||||| | ||| ||||| ||| ||| |||||| || || Sbjct 337897 TCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAAA 337838 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTAT 39795 || ||||| || ||||| || || | ||||| || || || | || Sbjct 337837 TATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTCGAT 337778 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| | |||||||| || ||||| ||||||||||| || || || | || | ||| Sbjct 337777 CCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGTGAAA 337718 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 ||| | ||| || | |||||| | || || | | ||||| ||||| || Sbjct 337717 TAGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTACATCTC 337658 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 ||||| ||||| ||||| || |||||||||||||| || | |||||| | | || Sbjct 337657 GGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGAGACCTG 337598 Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 |||||| |||| | |||| ||| ||| || || ||||| || ||||| Sbjct 337597 GACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCCGCAAA 337538 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAATTTATTCCAGTCA 40093 || || | || || |||| |||| || | | |||| | | | |||| || Sbjct 337537 GAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCC---CA 337481 Query 40094 TTGA----TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 ||| |||||| || | |||||| || || || ||||| || |||||||| || || Sbjct 337480 ATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGCTTT 337421 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 |||||||| | |||||| || |||| | || ||||| || Sbjct 337420 CTTGTACATTTCCCATATCTCCGGATAATTGATCGGAAACAT 337379 Score = 149 bits (164), Expect = 9e-31 Identities = 567/878 (65%), Gaps = 19/878 (2%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 |||||||||||| || || ||||||||||| ||||| || || || | ||| || || Sbjct 358857 TTTTTGGTATTCTCCGACCCGTTTCTCGAAGAAATTGGTCTTCCCCTGCAAAGAAATCAA 358916 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| ||||||| ||||| | |||| || || ||||||| | | Sbjct 358917 CTCCATCCAATCAAAAGGATTCGACGCATCGTACAACTTCCCGTATCCTAAAGCGCCGAG 358976 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || | ||| ||||| || || |||||| |||||| ||| |||||||| | || Sbjct 358977 TAACCGATCCGCAACGAACTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACCAG 359036 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || || | || || | |||||||| ||||| | | | || Sbjct 359037 GGCGCAGGGAAGCGCATCGCAGACGAATTCCCTCTCGATGTCCACGGCGTTCGACACGAT 359096 Query 39565 C-----GATGTTACTACCTCA-TCA-CTCGGTGGATGCAATAAATGTTTAAACATTAAGC 39617 | ||| || || |||| ||| || ||| | || | | | || || | | Sbjct 359097 CCCACGGATCTT-CT-CCTCGCTCAGCTTCGTG--TTCAGAAGACCGTAAAGCA---AAC 359149 Query 39618 AGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTC 39677 |||||||||| || || ||||| || ||||| || |||||||| || || || |||| Sbjct 359150 AGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAGTC 359209 Query 39678 CAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAG 39736 ||||||| ||||| || || || ||||| ||||| ||| || ||| |||||| || || Sbjct 359210 CAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCGCA-CAGAAGCTTCCAGAGAAAAAT 359268 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATC 39796 || ||||| || ||||| || |||| ||||| | || || || ||| Sbjct 359269 ATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGCACCATCGATC 359328 Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 39856 || | |||||||| || || ||||| || || || || || || | || | ||| Sbjct 359329 CATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGGCGTGGAAG 359388 Query 39857 AGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 ||| | ||| || | ||||| | || || | || ||||| ||||| ||| Sbjct 359389 AGACGAGTTTTCTCTGTGTTGTCTTTGATGTAACACTCCAATAGAAGACTGTACATCTCT 359448 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 ||||||||||| || || || ||||||||||| || || | ||| || | | || Sbjct 359449 GAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTCCGAGACCTGG 359508 Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 |||||| |||| | |||| ||| || || || || || || ||||| Sbjct 359509 ACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGATGCCGCAAAG 359568 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAATTTATT-CCAGTCA 40093 || || | || || |||| || | || | | ||| | | || ||||| | Sbjct 359569 AAAGCGAGAACGTGAGTAATGAAGTGACGCTCGTTGTCGGTAAGGGTGTGTTCCCAGTGA 359628 Query 40094 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTG 40153 |||| | || | ||| || ||||| || |||||||| ||||| || || || || Sbjct 359629 CGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCTTCAGCTTTCTTA 359688 Query 40154 TACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 ||||| | ||||| || |||| | |||||||| || Sbjct 359689 TACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | |||||||| ||| | ||||| | ||| |||| ||| || Sbjct 456661 TCCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAACAATGCC 456602 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | ||||| || ||| |||||||| || | || ||||||||| | ||| Sbjct 456601 ATTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATGCACAGA 456542 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||||||||| ||||| ||| ||||| |||||| ||| | ||||||||||| Sbjct 456541 AACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGTGTCATATAT 456482 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || || |||||| ||||| | ||| ||||| ||| Sbjct 456481 TCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Score = 109 bits (120), Expect = 8e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| || || || |||||||||| ||||| || || | | |||| || || || || Sbjct 458487 TAAAACCCTTCGGCTGTAAATATTTGATGTATAAGGCTCAAAACATTCGTTGTTACCAAG 458428 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 |||||| ||||| || |||||||||||||| || | | | ||||| || |||||| Sbjct 458427 AATTTGGCTGGTTGAAGCTGTTGGCATAGGTGCTACAAGAAGAGAATTTCGAACACCATG 458368 Query 68853 TGTTATGATTTTATCTTTTAGATG-TTTCCAATCCCAAAGATCAGATGGTACAACATTCC 68911 | | || || || ||| ||| ||||||||||| ||||||| || |||||||||| Sbjct 458367 TTTGGAAATATTCGCTCTTA-ATGCAGTCCAATCCCAACGATCAGAAGGGACAACATTCC 458309 Query 68912 AAAGATCGTATTGTAGAATTCC 68933 | | ||| | ||| |||| ||| Sbjct 458308 ACATATCATGTTGAAGAACTCC 458287 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| |||| || || || || || || |||||| || ||| | || || Sbjct 456342 GTTCCAGCATTGAATAGAGTTGGGGAAGCATGTGTAAACCATCGTTGAGACATCATATGA 456283 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||| |||||| || || || || | ||||| || | | || | ||| | | Sbjct 456282 TAAGTTCTAATAGCAGAGTCAATGTCAGTTTTGTGAATGCCAACAGAAACTCTCATGATC 456223 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 |||||||| || | ||| | | || | | ||||||||| || ||| | || ||| Sbjct 456222 ATATGCTGGGGCCTTTCAATCAACTTCCCGTCCACTTTCAACAGATAAGATCTCTCTAGA 456163 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| |||||||| | || |||||| || ||||| || || Sbjct 456162 GTTTTAAATCCAAAATAATCATAATCAAAGTCCCTGTCGTAGATTAT 456116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686889669589920