Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq704 111 2e-19 seq1843 105 8e-18 seq1214 84.2 3e-11 >seq704 Length=333105 Score = 111 bits (122), Expect = 2e-19 Identities = 273/408 (67%), Gaps = 12/408 (3%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | || | |||| || || ||||| | ||||| || || ||| Sbjct 214058 TCAAAGCGTCCAGGCCTGAGTAAAGCGTTGTCTAGAATATCTGCACGATTTGTAGCAGCA 213999 Query 11513 ATAACCACAATG---CCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 | |||||||| || || | ||||| ||||||||||| || || | |||||| Sbjct 213998 A---CCACAATGACCCCTGTGTTTCCCTCAAAACCATCCATCTCTGTCAGAAGCTGATTA 213942 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCA 11627 | |||||||||| |||||||| | | | | | |||| | | |||| | || | Sbjct 213941 AGAGTTTGTTCTCGTTCATCATTGCCC--CCTCCAATTCCAGTTCCTCTTTGCCTACCAA 213884 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 | ||||| |||||||||| || ||||| || || ||| || || | | ||| | Sbjct 213883 CAGCATCTATCTCATCAACAAACACAATGCAAGGAGCATTCTCCTTTGCCTTCTTAAAAA 213824 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 |||| || |||| || || ||||||||||||||||| ||||| | | | || Sbjct 213823 GATCACGGACCCGAGAAGCTCCAACACCAACAAACATCTCTACAAATTCAGATCCTGA-A 213765 Query 11748 ACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || || || |||||| || |||||| || || ||| ||||| || || || || Sbjct 213764 ATTGAGAAAAAAGGGACACCTGCTTCACCGGCAATTGCTTTTGCGAGTAGTGTTTTCCCT 213705 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 || || || ||| |||||| | ||| || || |||||||| Sbjct 213704 GTTCCAGGAGGACCAATGAGAAGAACACCTTTAGGAATGCTGGCACCA 213657 >seq1843 Length=672013 Score = 105 bits (116), Expect = 8e-18 Identities = 255/383 (67%), Gaps = 10/383 (3%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-GG 11598 || ||||||||||| || || | ||||| || || || || |||||||||||| || | Sbjct 455126 AATCCATCCATCTCTGTAAGAAGCTGATTTATCGTCTGCTCCCTCTCATCATTTCCTCCG 455185 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | | | || || | ||||| | ||||| || || || || |||||||| || || || Sbjct 455186 CCAAGC-CCCGCTCCCCGTTGTCTCCCCACGGCGTCTATTTCGTCAATGAACACGATGCA 455244 Query 11659 TGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || ||| | ||| || | ||||| | ||| ||||| || ||||| |||| Sbjct 455245 CGGTGCCTTGGTCTTC----GCCTTGTCAAACAAATCACGAACTCTCGACGCACCTACAC 455300 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 |||| || | |||||||| | || |||| ||| || |||||| || || || | Sbjct 455301 CAACGAATAATTCCACAAATTCTGAAGCAGCGCATGAGAAGAATGGTACTCCTGCCTCCC 455360 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGC 11834 | || | || | || || || ||||| || || || || || |||||||| | Sbjct 455361 CGGCCACAGCCCTTGCCAGCAGTGTCTTCCCGGTTCCCGGAGGTCCGACGAGAAGGCATC 455420 Query 11835 CTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 || |||||||| || || || || | ||||| | ||| | |||||||| | Sbjct 455421 CTTTTGGGATCTTAGCGCCTAAAGCAGTGTACTTGTCGGGGTTCTTCAAGAAATCCACTA 455480 Query 11895 TCTCTTCAAGTTCATCTTTGGCC 11917 ||||| || ||| ||| ||| Sbjct 455481 CCTCTTGTAGCTCAATTTTTGCC 455503 >seq1214 Length=1562992 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/284 (68%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 9285 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 9344 |||||| | ||| | |||||||| | || ||| ||| || ||||||||||| || Sbjct 875836 AATTACAGAGAGGCGTACGGACTTTACGCTTGCAACGGGATTCTCTTCAACCACGAGAGT 875895 Query 9345 CCGAGACGAGGTGCAGACTTT-GTGACCATGAAGATTACCGAGGGTATCAAACAAATCAT 9403 || | ||||| | ||| ||| ||||| | ||| || ||| | | | | |||| Sbjct 875896 CCACGCCGAGG-GGAGAATTTCGTGACGAGGAAAATCACCAGAGCTGTGGGAAGAATCCA 875954 Query 9404 GAAGGG--TGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGT 9461 || ||| || |||| | | || ||||| ||| | | ||| ||| |||||||| Sbjct 875955 GATGGGATTGCAAAGTAAGTTGTT--CTTGGGGAACCTGACAGCGTCGAGGGATTGGGGA 876012 Query 9462 CACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACGA 9520 ||| |||||| || || || |||||| | ||||| || || || |||||| ||||| Sbjct 876013 TTCGCCGGGGACTACGTGGAGGCGATGTGGTTGATGCTACAGCAGGA-GAAGCCTGACGA 876071 Query 9521 ATATGTAGTAGCAACGGGTGAGACCCATTCAGT-GAGGCGGTTC 9563 ||||| || || || | |||| |||| | || |||| | ||| Sbjct 876072 CTATGTGGTGGCGACTGAGGAGAGCCATACTGTGGAGGAGTTTC 876115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628014509308800