Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq59 113 6e-20 seq1624 104 3e-17 >seq59 Length=545433 Score = 113 bits (124), Expect = 6e-20 Identities = 331/501 (66%), Gaps = 13/501 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||||| ||||||||||| || |||||||| | ||| || |||||| Sbjct 358864 TATTCTCCGACCCGTTTCTCGAAGAAATTGGTCTTCCCCTGCAAAGAAATCAACTCCATC 358923 Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 ||||||| || ||| | | | ||| || | | | || | ||| | | Sbjct 358924 CAATCAAAAGGATTCGACGCATCGTACAACTTCCCGTATCCTAAAGCGCC--GAGTAACC 358981 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||||| ||| |||| ||||| | |||| | |||||| || | ||| | Sbjct 358982 GATCCGCAACGAACTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACCAGGGCGC 359041 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || ||||| || ||| ||| || |||| |||||||| || | | |||||| | Sbjct 359042 AGGGAAGCGCATCGCAGACGAATTCCCTCTCGATGTCCACGGCGTTCGACACGATCCCAC 359101 Query 129966 GAATGGTCTCCGTGC-CAGGTCTATTGCGCA-AAGTCTTGAAGAGTTCCACGGCAAACTC 130023 | || ||||| || ||| | | || || ||| | || || ||| || || Sbjct 359102 GGATCTTCTCCTCGCTCAGCT-TCGTGTTCAGAAGACCGTAAAGCAAACA-GGCGAAGTC 359159 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||| || ||||| | || || | ||| || |||||| ||| || ||||| || Sbjct 359160 GCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAGTCCAGGCATCAG 359219 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| || ||||||| |||||| |||||||| || |||||||| || ||||| ||||| Sbjct 359220 ACCGCGTTTCTTCAGCCAGAATATCGCACAGAAGCTTCCAGAGAAAAATATCCCTTCCAC 359279 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGGGACTTTGTATCAAACCACTTCA 130202 || || || || | | | ||||||||| || | | || ||| | ||| || Sbjct 359280 GCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGCACC----ATCGATCCATCGCA 359335 Query 130203 TCGCCCACTGCGCCTTTTTCT 130223 ||||||| | ||||||||||| Sbjct 359336 TCGCCCAATCCGCCTTTTTCT 359356 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||||||||| ||||| | || || | ||| || |||||| || || ||||| ||||| Sbjct 337942 GTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAATCCAGGCATCAGACC 337883 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || || || |||||||| |||||||| || |||||||| || ||||| ||||| || Sbjct 337882 ACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAAATATCCCTTCCACGCA 337823 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGGGACTTTGTATCAAACCACTTCATCG 130205 || || || | || | |||||| || || | | || | ||| | | ||||| Sbjct 337822 AGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTCGATCCATCG----CATCG 337767 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265 |||| | |||||| || | | ||| || | |||| | || | ||| || | | Sbjct 337766 CCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGTGAAATAGACGAGTTT 337707 Query 130266 TTTCTGATGGATCTTTGATGTA 130287 | |||| | |||||||||||| Sbjct 337706 TCTCTGCGGAATCTTTGATGTA 337685 >seq1624 Length=1424072 Score = 104 bits (114), Expect = 3e-17 Identities = 146/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||||||||||||||| ||||| | |||||||| | ||| ||||| || Sbjct 146482 TCAAAACCATCCATCTCAGTCAAGAGCTGATTAAGAGTTTGTTCTCTTTCGTCATTACCA 146541 Query 14210 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGA 14267 | | | | ||||| | | || |||| || |||||||| ||||||| ||| |||| Sbjct 146542 --CCTCCAATTCCCGCTCCTCTTTCTCTACCAACAGCGTCAATCTCATCGACGAATACGA 146599 Query 14268 TACATGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGAC 14325 |||| ||| |||||| || |||| ||| | ||| || || | ||||| | Sbjct 146600 TACAAGGTGCATTTTCTTTAGC--CTTCTTAAAAAGATCACGAACACGAGAAGCACCAAT 146657 Query 14326 ACCCACAAACATCTCCACAAA 14346 ||| |||||||| || ||||| Sbjct 146658 ACCAACAAACATTTCTACAAA 146678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618417976579680