Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq704 143 3e-29 seq1214 87.8 2e-12 seq59 87.8 2e-12 seq1843 82.4 9e-11 >seq704 Length=333105 Score = 143 bits (158), Expect = 3e-29 Identities = 281/407 (69%), Gaps = 10/407 (2%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | || | |||| || || ||||| | ||||| || || || Sbjct 214058 TCAAAGCGTCCAGGCCTGAGTAAAGCGTTGTCTAGAATATCTGCACGATTTGTAGCAGCA 213999 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| | ||||| | |||||||||||||||||||||| ||| || |||| | Sbjct 213998 ACCACAATGACCCCTGTGTTTCCCTCAAAACCATCCATCTCTGTCAGAAGCTGATTAAGA 213939 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9704 |||||||| ||||||||||| || | | | | |||| | | |||| | || || | Sbjct 213938 GTTTGTTCTCGTTCATCATT-GC-CCCCTCCAATTCCAGTTCCTCTTTGCCTACCAACAG 213881 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAG 9762 |||| |||||||||| || || ||||| || ||| || || |||| ||| || Sbjct 213880 CATCTATCTCATCAACAAACACAATGCAAGGAGCATTCTCCTTTGC--CTTCTTAAAAAG 213823 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 ||| || || || || || ||||||||||||||||| ||||| | | | ||| | Sbjct 213822 ATCACGGACCCGAGAAGCTCCAACACCAACAAACATCTCTACAAATTCAGATCCTGAA-A 213764 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 ||| || || |||||| | |||||| ||||| ||| ||||| || || || || | Sbjct 213763 TTGAGAAAAAAGGGACACCTGCTTCACCGGCAATTGCTTTTGCGAGTAGTGTTTTCCCTG 213704 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 | || || ||| ||| || ||||| ||||| |||| ||| Sbjct 213703 TTCCAGGAGGACCAATGAGAAGAACACCTTTAGGAATGCTGGCACCA 213657 >seq1214 Length=1562992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 195/284 (69%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 |||||| | ||| | |||||||| | || ||| ||| || ||||||||||| || Sbjct 875836 AATTACAGAGAGGCGTACGGACTTTACGCTTGCAACGGGATTCTCTTCAACCACGAGAGT 875895 Query 7421 CCGAGACGAGGTGCAGACTTT-GTCACAAAGAAGATTACCGAGGGTATCAAACAAATCAT 7479 || | ||||| | ||| ||| || || | ||| || ||| | | | | |||| Sbjct 875896 CCACGCCGAGG-GGAGAATTTCGTGACGAGGAAAATCACCAGAGCTGTGGGAAGAATCCA 875954 Query 7480 GAAGGG--TGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTGGGGT 7537 || ||| || |||| | | || ||||| ||| | | ||| |||| |||||||| Sbjct 875955 GATGGGATTGCAAAGTAAGTTGTT--CTTGGGGAACCTGACAGCGTCGAGGGATTGGGGA 876012 Query 7538 CACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACGA 7596 ||| |||||| || || || |||||| | ||||| || || || |||||| ||||| Sbjct 876013 TTCGCCGGGGACTACGTGGAGGCGATGTGGTTGATGCTACAGCAGGA-GAAGCCTGACGA 876071 Query 7597 ATATGTAGTAGCAACGGGTGAGACCCATACAGT-GAGGCGGTTC 7639 ||||| || || || | |||| |||||| || |||| | ||| Sbjct 876072 CTATGTGGTGGCGACTGAGGAGAGCCATACTGTGGAGGAGTTTC 876115 >seq59 Length=545433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT-CGCGTTCCTTTGCTGAGCG 94808 || || ||||||||||| ||| ||| | ||| || || || ||||||||| | Sbjct 359354 AAAAAGGCGGATTGGGCGATGCGATGGATCGATG----GTGCGGAGTCTTTTGCTGAGAG 359299 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868 | | || ||||| || || || || || || |||||||| |||||| || || | Sbjct 359298 GATTGTGGCTTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGCTTCTGTGCGATATT 359239 Query 94869 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 94928 ||||| ||||| || ||||| ||||| || || |||||||||||| | || || | Sbjct 359238 CTGGCTGAAGAAACGCGGTCTGATGCCTGGACTGACCTTCTCCAACGAATTGATATCGAG 359179 Query 94929 TGACGAGGGACTCCAC 94944 ||||| || |||||| Sbjct 359178 AGACGAAGGCCTCCAC 359163 >seq1843 Length=672013 Score = 82.4 bits (90), Expect = 9e-11 Identities = 213/321 (66%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 9672 || |||||||||||||| | ||| || || || || || |||| |||||||| || | Sbjct 455126 AATCCATCCATCTCTGTAAGAAGCTGATTTATCGTCTGCTCCCTCTCATCATTTCCTCCG 455185 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | || || | ||||| | |||||||| || || || |||||||| |||||||| Sbjct 455186 CCAAGC-CCCGCTCCCCGTTGTCTCCCCACGGCGTCTATTTCGTCAATGAACACGATGCA 455244 Query 9733 TGG----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 || ||| | ||||| || ||||| | ||| || || | | || || || Sbjct 455245 CGGTGCCTTGGTCTTCGC------CTTGTCAAACAAATCACGAACTCTCGACGCACCTAC 455298 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 |||||| || | |||||||| | || || | ||| || ||| || || | || Sbjct 455299 ACCAACGAATAATTCCACAAATTCTGAAGCAGCGCATGAGAAGAATGGTACTCCTGCCTC 455358 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 || || | || | || || || ||||| || || || || || |||| ||| Sbjct 455359 CCCGGCCACAGCCCTTGCCAGCAGTGTCTTCCCGGTTCCCGGAGGTCCGACGAGAAGGCA 455418 Query 9907 ACCTCGTGGAATCTTGGCGCC 9927 ||| ||| ||||| ||||| Sbjct 455419 TCCTTTTGGGATCTTAGCGCC 455439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583244556186720