Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq59 123 3e-23 >seq59 Length=545433 Score = 123 bits (136), Expect = 3e-23 Identities = 178/244 (73%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 59879 AGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAG 59937 |||||| || |||| |||| ||| | ||||| | ||| || || || |||| || | Sbjct 359403 AGAGAAAACTCGTCTCTTCCACGCCGTGGAGACTATTCCCTGC-GTGAAGAAAAAGGCGG 359345 Query 59938 AATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTT 59994 | ||||| |||| ||||| || || | |||| || ||||| | | | | |||| Sbjct 359344 ATTGGGCGATGCGATGGATCGATGGTGC-GGAG--TCTTTTGCTGAGAGGATTGTGGCTT 359288 Query 59995 TTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAA 60054 |||| ||||||||||| || || |||||||| |||||||| || |||||||| || | Sbjct 359287 TTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGCTTCTGTGCGATATTCTGGCTGAAGA 359228 Query 60055 AGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCC 60114 | || || || ||||| || |||| ||||||||||| |||| || | ||||| |||| Sbjct 359227 AACGCGGTCTGATGCCTGGACTGACCTTCTCCAACGAATTGATATCGAGAGACGAAGGCC 359168 Query 60115 TCCA 60118 |||| Sbjct 359167 TCCA 359164 Score = 113 bits (124), Expect = 5e-20 Identities = 297/446 (67%), Gaps = 8/446 (2%) Strand=Plus/Plus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 || |||||| |||||||| | || || || ||||| |||||| ||||| || | Sbjct 337500 ACAACGAGCGCCATTTCATTACTCACGTTCTCGCTTTCTTTGCGGCGTCCGATGGTATCG 337559 Query 59737 TGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 | | || ||| | | | | || || || |||||| | | || || || ||| Sbjct 337560 TCCTTGAGAATCTGGCCGTTCGATTCATGAAAGAGGTCCAGGTCTCAGAAGCACGTGCGT 337619 Query 59797 TCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 |||||| | |||| ||| | | ||| || || ||||||| |||| || | | Sbjct 337620 TCTACGGATTTCAGATCGCT-ATTGAGAACATTCATTCCGAGATGTACAGTCTTCTCCTG 337678 Query 59856 GATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCC 59915 || | |||| ||| | | |||||| || |||| || | ||| | ||||| Sbjct 337679 GAGTGTTACATCAAAGATTCCGCAGAGAAAACTCGTCTATTTCACGCCGTGGAGACTATT 337738 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCATCA 59972 || || ||| | || || || ||||| |||| ||||| || || | |||| || Sbjct 337739 CCTTGTGTAAAAAAGAAGGCGGATTGGGCGATGCGATGGATCGACGGTGC-GGAG--TCT 337795 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | | || | || ||||| ||||||||||| || || |||||||| ||| Sbjct 337796 TTCGCTGAGAGGATCGTGGCCTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGTTTC 337855 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 ||||| || |||||| | ||||| ||||| || ||||| || ||| ||||||||||| Sbjct 337856 TGTGCGATATTCTGGTTAAAAAAACGTGGTCTGATGCCTGGATTGACCTTCTCCAACGAA 337915 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || | ||||| || ||||| Sbjct 337916 TTGATATCGAGAGACGAAGGTCTCCA 337941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548509523584320