Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq623 98.7 1e-15 seq1980 95.1 1e-14 seq891 95.1 1e-14 seq1716 87.8 2e-12 >seq623 Length=416336 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 308863 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 308922 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 308923 TGAGCTATGAAAGCAA 308938 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 309859 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 309918 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 309919 TGAGCTATGAAAGCAA 309934 >seq1980 Length=657283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 210249 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 210308 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| |||||| || Sbjct 210309 TGAGCTATGAAAGCTAA 210325 >seq891 Length=1050507 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 973059 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 973000 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 972999 TGAGCTATGAAAGC 972986 >seq1716 Length=724291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||||| |||| ||||| |||||||||||||||||| |||||||| || || Sbjct 378943 TGCTTTCAATGAGAGTTGAACTCATGACCTCCCGCTTACTAAACAGGTGCTCTAACTAAC 379002 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 379003 TGAGCTATGAAAGCA 379017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547200760034400