Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq486 125 4e-24 >seq486 Length=444201 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||| ||||| |||||||| ||||| ||||||| | Sbjct 158523 CCTCCTCTCAAACGAAGAACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 158464 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || | || || |||||||| || || | ||| ||||| || || Sbjct 158463 AGTGTACGACCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 158404 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| |||| || | ||| || || ||||||||| |||||| Sbjct 158403 ATTCCCTCCTTGTCTTGGATC-TTAGCTTTCACATTATCAATTGTGTCCGAAGACTCCAC 158345 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || |||||||| | ||||||||||| |||||||| Sbjct 158344 CTCTAAAGTGATGGTCTTACCGGTGAGAGTTTTCACAAAGATCTGCAT 158297 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| ||||| |||||||| ||||| ||||||| | Sbjct 159207 CCACCACGAAGACGGAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 159148 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | || || |||||||| || || | ||| ||||| || || Sbjct 159147 AGGGTCCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGG 159088 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| |||| || | ||| || || ||||||||| ||| || Sbjct 159087 ATTCCCTCCTTGTCTTGGATC-TTCGCTTTCACATTATCAATTGTGTCCGAAGACTCAAC 159029 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || || || || |||||||| Sbjct 159028 CTCCAGTGTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTC 34546 ||||| | ||||| || |||||| ||| || |||||||| || || | |||||| | Sbjct 173406 AGACGGAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTG--C 173463 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | ||||| | || ||||| ||||| || |||||||| ||||| || || | || | Sbjct 173464 GACCATCTTCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTT 173523 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACG 34665 |||| ||| ||| |||||| ||||| | || ||||| ||| || || | Sbjct 173524 CCTTATCT-TGAATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAAC 173582 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| ||||| | ||| || || ||||||||||| Sbjct 173583 GTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||| || ||| |||||||| ||||| ||||||| | Sbjct 158979 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCA 158920 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | || || || ||||| || || | ||| ||||| || || Sbjct 158919 AGGGTCCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGA 158860 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCC 34656 | ||||||||||||| ||| || | || || | ||||||||| || | |||| Sbjct 158859 ATTCCCTCCTTGTCT-TGAATCTTCGCCTTCACATTGTCAATTGTGTC--CGATGACTCC 158803 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| || | || || || || |||||||| Sbjct 158802 ACCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | ||| | ||| || ||| ||| || ||||||||||| || | Sbjct 170036 CCCCCTCTTAGCCTAAGCACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCC 170095 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||| || || ||||| || || || |||||||| || || Sbjct 170096 AAAGTCCGGCCATCTTCTAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGG 170155 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||||| ||||| || ||| ||||| ||| || Sbjct 170156 ATACCTTCCTTATCT-TGAATTTTTGCCTTAACATTATCAATGGTGTCAGACGACTCAAC 170214 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || | || || || ||||||||||| Sbjct 170215 CTCTAAAGTGATGGTTTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 170262 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | ||| | ||| || ||| ||| ||||||||||| || || | Sbjct 170492 CCCCCTCTTAGCCTAAGCACAAGATGTAGGGTGGACTCTTTTTGAATGTTGTAGTCGGCC 170551 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | || || || |||||||| || || || ||||| ||||| Sbjct 170552 AATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAATCGTTGCTGGTCTGGCGGG 170611 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||| |||||||| || ||||| || || || Sbjct 170612 ATACCTTCTTTGTC-CTGAATTTTAGTTTTAACATTATCGATTGTATCAGAAGATTCTAC 170670 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||||| || || || |||| ||||| ||||| || ||||| Sbjct 170671 CTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGATTTGCAT 170718 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||| || ||| ||||| || || |||||||| | | Sbjct 158751 CCTCCTCTCAAACGAAGAACAAGATGAAGTGTGGATTCCTTCTGGATATTATAATCAGCA 158692 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | || || |||||||| || || | ||| ||||| || || Sbjct 158691 AGGGTACGACCATCCTCCAACTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGAGGG 158632 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCC 34656 | ||||||||||||| ||| || | || || | ||||||||| || | |||| Sbjct 158631 ATTCCCTCCTTGTCT-TGAATCTTCGCCTTCACATTGTCAATTGTGTC--CGATGACTCC 158575 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| || | || || || || |||||||| Sbjct 158574 ACCTCTAAAGTGATGGTCTTACCAGTCAGAGTCTTTACGAAGATCTGCAT 158525 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || |||||||| ||||| | ||| || ||| | |||||||| || || || ||||| Sbjct 169160 TCTTTCTGAATGTTGTAATCCGCAAGGGTCCGCCCATCTTCAAGCTGCTTTCCAGCAAAG 169219 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | || || || || || | ||||||||||||| |||| |||| || ||| | Sbjct 169220 ATCAACCTTTGCTGATCAGGTGGGATTCCCTCCTTGTCTTGGATC-TTTGCCTTTACGTT 169278 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| || ||| ||| || || | || || || || || || || || || || Sbjct 169279 GTCAATGGTATCTGATGACTCAACCTCAAGTGTGATGGTCTTTCCTGTCAAAGTCTTAAC 169338 Query 34695 AAAAATCTGCAT 34706 ||| || ||||| Sbjct 169339 AAATATTTGCAT 169350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721053911124