Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq486 105 6e-18 seq1364 100 2e-16 seq841 91.5 1e-13 >seq486 Length=444201 Score = 105 bits (116), Expect = 6e-18 Identities = 176/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTT 39099 || ||||||| || || ||||||| || ||| ||| | |||||| ||| ||||||| Sbjct 170477 ACGAAAATTTG--CATACCCCCTCTTA-GCCTAAGCACAAGATGTAGGGTGGACTCTTTT 170533 Query 39100 TGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 || || || || ||||| | ||| || | || || | ||| ||||| |||||||| | Sbjct 170534 TGAATGTTGTAGTCGGCCAATGTACGACCATCTTCTAACTGCTTGCCTGCAAATATCAAT 170593 Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-AC 39218 || |||||||| | || | | ||||||||| ||| ||| |||| | | | | | Sbjct 170594 CGTTGCTGGTCTGGCGGGATACCTTCTTTGTCC-TGAATTTTAGTTTTAACATTATCGAT 170652 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||||| || || || || | || || | |||||||| || ||||| |||||||| Sbjct 170653 TGTATCAGAAGATTCTACCTCTAATGTTATGGTCTTTCCCGTTAGTGTTTTTACAAAGAT 170712 Query 39279 TTGCATCT 39286 |||||||| Sbjct 170713 TTGCATCT 170720 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||| | ||||||||| |||||| || || || |||||||| Sbjct 173625 CCCCCTCTGAGTCGAAGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCC 173684 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || | || || | ||| ||||| ||||| || | |||||||||||| |||||| Sbjct 173685 AAAGTACGACCATCTTCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGG 173744 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | | || || | | ||| ||| || | | | | | | | || || |||||| | Sbjct 173745 -ATACCTTCCTTAT-CTTGAATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAA 173802 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | |||||| |||| || || ||||| || || || || ||||||| Sbjct 173803 CCTCTAACGTGATTGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCATCT 173853 >seq1364 Length=85398 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | |||| ||| ||||| |||||||| || || || ||||| Sbjct 46550 CCTCCCCTCAGACGGAGAACCAGATGGAGCGTCGATTCTTTTTGGATGTTGTAGTCGGCG 46491 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || ||| |||| || || || || || || || ||||||||||||||||| |||||| Sbjct 46490 AGAGTGCGTCCGTCCTCCAGTTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGTGGG 46431 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || || ||| ||| || |||| | | | ||| || ||||| || Sbjct 46430 -ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGGACTCAAC 46372 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || |||| ||||| || || || |||||||| ||||||||| Sbjct 46371 CTCGAGAGTAATCGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCATCTTT 46320 >seq841 Length=1035533 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || |||||||| || |||||||| ||| | || |||||||| || || || || Sbjct 649964 CTCCTTCTGAATATTATAGTCAGCAAGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAA 650023 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || | |||||||||||| |||||| | | ||||||||| || || || | Sbjct 650024 GATCAAACGCTGCTGGTCTGGTGGG-ATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGT 650082 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | |||||| || || || || | ||||| | || ||||| || ||||| | Sbjct 650083 TATCGATCGTATCCGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCA 650142 Query 39272 CAAAGATTTGCATCTTT 39288 ||||||| ||||| ||| Sbjct 650143 CAAAGATCTGCATGTTT 650159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429533936226164