Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq486 156 3e-33 seq1915 102 6e-17 seq841 95.1 8e-15 >seq486 Length=444201 Score = 156 bits (172), Expect = 3e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| |||||||| |||||| | || ||||| || | Sbjct 170262 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAAACCATCACTTTAGAGGTTGAGTCGTCT 170203 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| |||||| || || || |||||| | || ||||| || Sbjct 170202 GACACCATTGATAATGTTAAGGCAAAAA-TTCAAGATAAGGAAGGTATCCCACCAGACCA 170144 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || ||||| ||||| ||| | ||||| | || ||||| | ||| || || Sbjct 170143 ACAACGCTTGATCTTTGCAGGCAAGCAATTAGAAGATGGCCGGACTTTGGCCGACTATAA 170084 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || |||||||||||| ||||| | || | ||| | |||| || Sbjct 170083 CATTCAGAAAGAGTCCACACTACATCTTGTGCTTAGGCTAAGAGGGGG 170036 Score = 141 bits (156), Expect = 6e-29 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||| | |||||||||||||| || || ||||| || ||||| ||||| | || ||||| Sbjct 173857 CTTCAGATGCAGATTTTCGTCAAGACGCTCACTGGCAAAACAATCACGTTAGAGGTTGAG 173798 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 || | ||||| | || ||| |||| |||||| || || || |||||| | || || Sbjct 173797 TCGTCTGACACCATCGACAATGTTAAGGCAAAAA-TTCAAGATAAGGAAGGTATCCCACC 173739 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 ||| || |||||||| || ||||| ||||| || | ||||| | || ||||| | ||| Sbjct 173738 AGACCAGCAGCGTTTGATCTTTGCAGGCAAGCAGTTAGAAGATGGTCGTACTTTGGCCGA 173679 Query 23784 TTACAACATACAAAAAGAGTCCACATTACA 23813 ||||||||| || ||||||||||| |||| Sbjct 173678 TTACAACATTCAGAAAGAGTCCACGCTACA 173649 Score = 138 bits (152), Expect = 8e-28 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || ||||| ||||| | || ||||| || | Sbjct 173623 ATGCAGATTTTCGTCAAGACGCTCACCGGCAAAACCATCACGTTAGAGGTTGAGTCGTCT 173564 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| ||||||| || || || |||||| | || ||||| || Sbjct 173563 GACACCATCGACAATGTTAAGACAAAAA-TTCAAGATAAGGAAGGTATCCCACCAGACCA 173505 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| || || || ||||||| | |||||||| | || ||||| Sbjct 173504 GCAGCGTTTGATCTTTGCAGGTAAGCAGTTGGAAGATGGTCGCACTTTGGCTGACTACAA 173445 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 173444 CATTCAGAAAGAGTCCAC 173427 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || ||||| |||||| | || ||||| || | Sbjct 170034 ATGCAGATTTTCGTCAAGACGCTCACTGGCAAAACCATCACTTTAGAGGTTGAGTCGTCT 169975 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || || ||||| |||||| | || ||||| || Sbjct 169974 GACACCATCGACAACGTAAAGACTAAGATACAGGACAAGGAAGGTATCCCACCAGACCAG 169915 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||| ||| ||||||| | || ||||| | ||| |||||| Sbjct 169914 CAACGTTTGATCTTTGCAGGCAAGCAATTGGAAGATGGTCGTACTTTGGCCGACTACAAC 169855 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || |||||||| ||||| ||||| Sbjct 169854 ATCCAAAAAGAATCCACCTTACA 169832 Score = 131 bits (144), Expect = 1e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| |||||||| |||||| | || ||||| | | Sbjct 169806 ATGCAGATTTTCGTCAAGACACTCACCGGAAAAACCATCACTTTAGAGGTTGAGTTGTCT 169747 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | |||| | || || ||||| | || ||||| || Sbjct 169746 GACACCATCGACAATGTTAAGGCGAAAA-TCCAAGATAAGGAAGGCATCCCACCAGACCA 169688 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || ||||| |||||||| ||||||| | |||||||| | ||| ||||| Sbjct 169687 GCAACGCTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTTTGGCCGACTACAA 169628 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 || |||||||||||||| |||| Sbjct 169627 TATTCAAAAAGAGTCCACCCTACA 169604 Score = 131 bits (144), Expect = 1e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||| | ||||| || || || ||||| || |||||||| || || || | || || || Sbjct 170724 CTTCAGATGCAAATCTTTGTAAAAACACTAACGGGAAAGACCATAACATTAGAGGTAGAA 170665 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 || | || || | || ||| ||||||| |||| || |||||||||||| | ||||| Sbjct 170664 TCTTCTGATACAATCGATAATGTTAAAACTAAAA-TTCAGGACAAAGAAGGTATCCCGCC 170606 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 ||| || || || || |||||||| ||||| || | ||||| | || || || | ||| Sbjct 170605 AGACCAGCAACGATTGATATTTGCAGGCAAGCAGTTAGAAGATGGTCGTACATTGGCCGA 170546 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| |||||||||||||| ||||| | || | ||| | |||| || Sbjct 170545 CTACAACATTCAAAAAGAGTCCACCCTACATCTTGTGCTTAGGCTAAGAGGGGG 170492 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| || ||||| |||||| | |||||||| || | Sbjct 169578 ATGCAAATTTTCGTCAAGACGCTCACCGGCAAAACCATCACTTTAGAAGTTGAGTCGTCT 169519 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| ||| || || |||| | | || ||||| || Sbjct 169518 GACACCATCGACAATGTAAAGGCAAAGATTCAAGATAAGGAAGCTATCCCACCAGACCAG 169459 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| || || ||| ||||||| | || ||||| | ||| |||||| Sbjct 169458 CAACGCTTGATCTTTGCTGGAAAGCAATTGGAAGATGGTCGTACTTTGGCCGACTACAAC 169399 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || || ||||||||||| |||| Sbjct 169398 ATTCAGAAAGAGTCCACCCTACA 169376 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||| | |||||||| || || ||||| ||||| || || || |||||| | || || || Sbjct 158291 CTTCAGATGCAGATCTTTGTGAAAACTCTCACCGGTAAGACCATCACTTTAGAGGTGGAG 158350 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 || ||||||| |||| ||| | ||| | || | | ||||| || || | || || Sbjct 158351 TCTTCGGACACAATTGATAATGTGAAAGCTAAGA-TCCAAGACAAGGAGGGAATCCCTCC 158409 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 || || ||| | || || |||||||| || || |||| || | || || | | || Sbjct 158410 TGACCAGCAGAGGTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGTCGTACACTTGCAGA 158469 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||||| ||||| || || || ||||| | ||| | | ||| ||||||| Sbjct 158470 TTACAACATCCAAAAGGAATCTACTCTACATCTTGTTCTTCGTTTGAGAGGAGG 158523 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || |||||| | || || || || || Sbjct 158753 ATGCAGATCTTCGTAAAGACTCTGACTGGTAAGACCATCACTTTAGAGGTGGAGTCATCG 158812 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || || | || || || || Sbjct 158813 GACACAATTGACAATGTGAAGGCGAAGA-TTCAAGACAAGGAGGGAATTCCTCCCGACCA 158871 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || |||| || | || || | | |||||||| Sbjct 158872 GCAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGGACCCTTGCAGATTACAA 158931 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || |||||| | ||| | ||| | | ||| ||||||| Sbjct 158932 CATCCAAAAGGAATCCACACTTCATCTTGTTCTTCGTTTGAGAGGAGG 158979 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| || || ||||| || || Sbjct 158981 ATGCAGATCTTCGTAAAGACTCTGACTGGCAAGACTATCACACTGGAGGTTGAGTCTTCG 159040 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| || || | || || || || Sbjct 159041 GACACAATTGATAATGTGAAAGCGAAGA-TCCAAGACAAGGAGGGAATCCCTCCCGACCA 159099 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || |||| || | || || | | |||||||| Sbjct 159100 GCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGGACCCTTGCAGATTACAA 159159 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| || || || | ||||| || Sbjct 159160 CATCCAAAAGGAATCTACTCTTCATTTGGT 159189 >seq1915 Length=652484 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || || | ||||| || || || || | ||||| || | | Sbjct 300244 AATGCAAATTTTCGTAAAGACGTTGACGGGCAAGACAATGACATTAGAAGTGGAAACTTC 300185 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||||| || | || | || |||||||||||| | || ||||| | Sbjct 300184 AGATACCGTTGCGAATATAAAGAGTAAGA-TTCTAGACAAAGAAGGTATCCCTCCAGACC 300126 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | | || ||||| || |||||||| || || || |||| | | | ||||||| Sbjct 300125 AACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATCGCATTCTTGCTGATTACA 300066 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || ||||| || || | ||| | || | | ||| |||||||| Sbjct 300065 ACATTCAGAAAGAATCGACCCTCCATCTGGTAATCCGATTGAGAGGAGGA 300016 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || || | ||||| ||||| || ||| | ||||| || | | Sbjct 300472 AATGCAAATTTTCGTAAAGACATTGACGGGCAAAACAATTACTTTGGAAGTAGAAACTTC 300413 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||||| || | || | || |||||||||||| | || ||||| | Sbjct 300412 AGATACCGTTGCGAATATAAAGAGTAAGA-TTCAAGACAAAGAAGGTATCCCTCCAGACC 300354 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | | || ||||| || |||||||| || || || ||| | | | ||||||| Sbjct 300353 AACAAAGACTCATCTTTGCAGGTAAACAACTTGAGGATGATTGCATTCTTGCTGATTACA 300294 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || ||||| || || | ||| | || | | || |||||||| Sbjct 300293 ACATTCAGAAAGAATCGACCCTCCATCTGGTACTCCGACTGAGAGGAGGA 300244 >seq841 Length=1035533 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || |||||||| ||||| || |||||||| ||||| || || || Sbjct 650158 AACATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTCGAATCT 650099 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | || | | || || ||| ||||||||||| | || ||||| Sbjct 650098 TCGGATACGATCGATAACGTGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGAC 650039 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||||| || || ||||| || || || || || | ||| || | | || || Sbjct 650038 CAGCAGCGTTTGATCTTCGCCGGGAAGCAGCTTGAGGATGGACGTACACTTGCTGACTAT 649979 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || || || ||||| || Sbjct 649978 AATATTCAGAAGGAGTCAAC 649959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338000421771824