Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1915 100 2e-16 >seq1915 Length=652484 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||| | | |||| || | ||| |||||||| |||||||||||||| | Sbjct 299561 CCTCCTCTCAACCGAAGTACCAGATGGAGAGTCGATTCTTTCTGAATATTGTAATCAGAA 299620 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | | | | ||| || | ||| || || ||| | || || ||||| ||||| ||| Sbjct 299621 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299680 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | |||||||||||| |||||| || |||| || ||||| |||| | | | Sbjct 299681 ATGCCTTCTTTGTCTTGAATTTTACTCTTTACATTCGCAACCGTATCTGAAGTTTCTACT 299740 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || | ||||| || ||||||||||| || || | |||||||||||| Sbjct 299741 TCCAAAGTAATTGTCTTGCCCGTCAACGTCTTTACGAAAATTTGCATT 299788 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | |||| || | ||| |||||||| ||||| |||||||| || Sbjct 300473 CCTCCTCTCAATCGGAGTACCAGATGGATAGTCGATTCTTTCTGAATGTTGTAATCAGCA 300532 Query 101072 ATAGTTTTGGAATCTTCC---AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACG 101128 | | | | |||| ||| | ||| || || ||| | || || |||||||||||| Sbjct 300533 AGAAT---GCAATCATCCTCAAGTTGCTTACCTGCAAAGATCAGTCTTTGTTGGTCTGGA 300589 Query 101129 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT 101188 || | |||||||||||| ||| || || |||| || || || |||| | || Sbjct 300590 GGGATGCCTTCTTTGTCTTGAATCTTACTCTTTACATTCGCAACGGTATCTGAAGTTTTT 300649 Query 101189 GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | ||||| |||||| | |||||||| || | || |||||||| Sbjct 300650 ACTTCCAAAGTAATTGTTTTGTCTGTCAATGTCTTTACGAATATTTGCAT 300699 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC---AATTGTTTG 101098 || |||||||| ||||| |||||||| || | | | | |||| ||| | |||||| Sbjct 300275 GTCGATTCTTTCTGAATGTTGTAATCAGCAAGAAT---GCAATCATCCTCAAGTTGTTTA 300331 Query 101099 CCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGT 101158 || ||| | || || |||||||||||| || | ||||||||||| ||| || Sbjct 300332 CCTGCAAAGATGAGTCTTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTGAATCTTACTC 300391 Query 101159 TTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAAT 101218 || | || || || || |||| | | ||| | ||||| ||||||||||||||| Sbjct 300392 TTTATATTCGCAACGGTATCTGAAGTTTCTACTTCCAAAGTAATTGTTTTGCCCGTCAAT 300451 Query 101219 GTTTTAATAAAAATTTGCATT 101239 || || | |||||||||||| Sbjct 300452 GTCTTTACGAAAATTTGCATT 300472 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||||| | |||| || | || |||||||| ||||| |||||||| | Sbjct 299789 CCTCCTCTCAATCGGATTACCAGATGGAGGGTCGATTCTTTCTGAATGTTGTAATCAGAA 299848 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | | | | ||| || | ||| || || ||| | || || ||||| ||||| ||| Sbjct 299849 AGAATATGATCATCCTCAAGTTGCTTACCTGCAAAGATGAGTCTTTGCTGGTCAGGGGGG 299908 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | |||||||||||| |||||| || | || || || | |||| | | | Sbjct 299909 ATGCCTTCTTTGTCTTGAATTTTACTCTTTATATTCGCAACGATATCTGAAGTTTCTACT 299968 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || | ||||| || |||||||||||||| || | |||||||||||| Sbjct 299969 TCTAAAGTAATTGTCTTGCCCGTCAATGTCTTTACGAAAATTTGCATT 300016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409649676173052