Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq59 120 3e-22 >seq59 Length=545433 Score = 120 bits (132), Expect = 3e-22 Identities = 560/875 (64%), Gaps = 18/875 (2%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| |||||||| || || || ||||||||||| ||||| || | || ||||| Sbjct 338248 TTTCTGGTATTCTCCGACCCGTTTCTCGAAGAAATTTGTTTTCCCCTGCAAAGAAATCAA 338189 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 ||||| ||||||| ||||| | || | ||| ||| || || |||||| | || Sbjct 338188 CTCCATCCAATCAAAAGGATTCGACGCATCGTACAACTTTCCATACCCCAGAGCTCCGAG 338129 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 || || || || || ||||| || || |||||||| || | | ||| ||||| | || Sbjct 338128 TAACCGATCCGCGACGAATTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACCAA 338069 Query 4436 T-CTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | || ||| || || || || | || ||| || || ||||| || | | Sbjct 338068 AGCGCA-AGGAAGAGC--ATCGCAGACGAATTCTCTCTCGATGTCAACGGCGTCCGATAC 338012 Query 4493 TATATCTTTTATTTTATCTTTAGAT--GGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || | || || || | | | | || | | | | | | || | ||||| Sbjct 338011 GATCCCACGGATCTTCTCCTC-GCTCAGCTTCGTGTTCAGAAGACCGTAA-AGCAAACAG 337954 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 || |||||||| || | |||||||||||| |||| |||||| || || || ||||| Sbjct 337953 GCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAATCCA 337894 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||| | ||||| | ||| ||||| || || ||||| || ||||| Sbjct 337893 GGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAAATATC 337834 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| ||| ||||| || || | | |||| || || ||| ||| Sbjct 337833 CCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTC---GATC 337777 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 ||| | ||||| | || || || || || || ||||| || | | |||| |||| Sbjct 337776 CATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGTGAAAT 337717 Query 4791 AATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 | | |||| || | |||| || ||| || | || || || ||||| || Sbjct 337716 AGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTACATCTCG 337657 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTG 4909 ||||| || || || ||||| |||||||||||||| || ||| | ||||||| || || Sbjct 337656 GAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCA-CGTGCTTCTGAGACCTG 337598 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 || || || |||| | | | || || || ||||| || || ||||| Sbjct 337597 GACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCCGCAAA 337538 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGT--CAGGCTTAAGT-TTTTTCCAGTG 5026 || || | ||| |||| || || | | |||| || ||| | || ||| || Sbjct 337537 GAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCCCAATG 337478 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | ||||| || | ||| || || || | ||||| || ||||| || ||||| || Sbjct 337477 ACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGCTTTCTT 337418 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 |||||| ||| || || ||||| | ||||||| Sbjct 337417 GTACATTTCCCATATCTCCGGATAATTGATCGGAA 337383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427038004001924