Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq59 224 1e-53 seq2201 111 2e-19 >seq59 Length=545433 Score = 224 bits (248), Expect = 1e-53 Identities = 391/565 (69%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || |||||||| || |||||||| ||||| || |||||||| || || || Sbjct 337959 AAACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTC 337900 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||| || ||||||||||| | ||| ||||| || |||| |||||| || Sbjct 337899 AATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAA 337840 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 ||||| ||||| ||| ||||| || | ||||| || || | || || || Sbjct 337839 AATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAA--GACTCCGCACCGT 337782 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| || |||||||| |||||||| ||||||||||| || || || | || | Sbjct 337781 CGATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGT 337722 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||| ||| |||| || | |||||| | |||| || | | |||||| |||| Sbjct 337721 GAAATAGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTACA 337662 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | ||||| ||||| || ||||| || |||||||||||||| || | ||||||| || Sbjct 337661 TCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGAGA 337602 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| ||||| | ||||| | |||| ||||||| || || ||||| || | Sbjct 337601 CCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCCG 337542 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTG--GAAGTCAGTTTATTCCA 48613 |||| || || | || || |||| |||| |||||| | | ||| | |||| Sbjct 337541 CAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCC- 337483 Query 48614 GTCATTGA----TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTG 48669 || ||| |||||| || | |||||| || || || ||||| || || ||||| | Sbjct 337482 --CAATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGG 337425 Query 48670 CTTTTTTATACATATTCCATATATC 48694 |||| || ||||| | |||||| || Sbjct 337424 CTTTCTTGTACATTTCCCATATCTC 337400 Score = 161 bits (178), Expect = 1e-34 Identities = 374/558 (67%), Gaps = 7/558 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || || || || || || ||||| ||||| || |||||||| || || || Sbjct 359146 AAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTC 359205 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||| || || ||||| || ||||| ||||| || ||| |||||| || Sbjct 359206 AGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCGCACAGAAGCTTCCAGAGAAA 359265 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 ||||| ||||| ||| ||||| || || || ||||| | || | || || | Sbjct 359266 AATATCCCTTCCACGCAAGCAAAAGCCACAA-TC-CTCTCAGCAAAAGACTCCGCACCAT 359323 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| || |||||||| ||||| ||||| || || || || || || | || | Sbjct 359324 CGATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGGCGT 359383 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 |||||| |||| || || | ||||| | |||| || | || |||||| |||| Sbjct 359384 GGAAGAGACGAGTTTTCTCTGTGTTGTCTTTGATGTAACACTCCAATAGAAGACTGTACA 359443 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || || || || || || || || ||||||||||| || || | || || | || Sbjct 359444 TCTCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTCCGAGA 359503 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| ||||| | ||||| | |||| |||||| || || || || || | Sbjct 359504 CCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGATGCCG 359563 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA--GTTTATT-CC 48612 |||| || || | || || |||| || | |||||| || | || | || || Sbjct 359564 CAAAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGTTGTCGGTAAGGGTGTGTTCCC 359623 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| | |||| | || | ||| || ||||| || |||||||| || || || |||| Sbjct 359624 AGTGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCTTCAGCTT 359683 Query 48673 TTTTATACATATTCCATA 48690 | |||||||| | ||||| Sbjct 359684 TCTTATACATCTCCCATA 359701 >seq2201 Length=583503 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | ||| |||| ||| | ||||| |||||||||| ||| || Sbjct 456660 CCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAACAATGCCA 456601 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || || ||||| || ||| |||||||| ||| | || ||||||||| | || Sbjct 456600 TTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATGCACAGAA 456541 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | |||||||| ||||| | || | | |||| ||| || ||| | || || || || Sbjct 456540 ACACCTATTCCCCCTGC-AGATTTGCTGATTACAGCACACTCTTTAAGAGTGTCATATAT 456482 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| ||||||||||| ||||| | ||| ||||| ||| Sbjct 456481 TCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201 || || || || |||||||||| ||||| || || | | |||| ||||| || | | Sbjct 458486 AAAACCCTTCGGCTGTAAATATTTGATGTATAAGGCTCAAAACATTCGTTGTTACCAAGA 458427 Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 77261 ||||| || ||||| |||||||||||||| || | | | ||||| | ||||||| Sbjct 458426 ATTTGGCTGGTTGAAGCTGTTGGCATAGGTGCTACAAGAAGAGAATTTCGAACACCATGT 458367 Query 77262 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAA 77321 | || || || ||| ||||||||||| |||| ||||| ||||||| ||| Sbjct 458366 TTGGAAATATTCGCTCTTAATGCAGTCCAATCCCAACGATCAGAAGGGACAACATTCCAC 458307 Query 77322 AGATCGTATTGTAGAATTCC 77341 | ||| | ||| |||| ||| Sbjct 458306 ATATCATGTTGAAGAACTCC 458287 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 ||||||||| || |||| |||||||| || |||||| ||| | | ||| || Sbjct 457241 TTTCATATTTTGTGTATAATTTCTCAAATTCGTCACCCCAACAATCTGCTAGTCCTGGTG 457182 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 |||||||||||| | || |||||| | |||| || |||| || ||||||||||| Sbjct 457181 CTTCATTTGGGCAAAACAGTGACCATTGCCCATTACTCTGGACTCTTTGCATAAAGAGAT 457122 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||| | ||| |||| | ||||| ||||| || ||| | ||||| Sbjct 457121 CAGGCACCCAGAGAGAATAAAATAAATCTCTGGCTCTGTTCTCTTC 457076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694649453473920