Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq59 224 1e-53 seq2201 140 5e-28 >seq59 Length=545433 Score = 224 bits (248), Expect = 1e-53 Identities = 581/879 (66%), Gaps = 21/879 (2%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| |||||||| || || ||||||||||| ||||| ||||| || | ||| || || Sbjct 338248 TTTCTGGTATTCTCCGACCCGTTTCTCGAAGAAATTTGTTTTCCCCTGCAAAGAAATCAA 338189 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||| ||||| | ||| || | ||| | | || | || | Sbjct 338188 CTCCATCCAATCAAAAGGATTCGACGCATCGTACAACTTTCCATACCCCAGAGCTCCGAG 338129 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 | | ||| || |||||||| || || |||||| ||| |||||||| | | Sbjct 338128 TAACCGATCCGCGACGAATTCGATGTATTGGCTCATCAGAACACCGTTCATTCCCACCAA 338069 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | || ||||| || | || ||| || || || || ||||||| || Sbjct 338068 AGCGCAAGGAAGAGCATCGCAGACGAATTCTCTCTCGATGTCAACGGCGTCCGATACGAT 338009 Query 46578 C-----GATGTTACTGTTTCCTCA-CTTGGTGGATGCATCAAATGTTTAAACATTAAACA 46631 | ||| || || | |||| ||| ||| | || | | | || || |||| Sbjct 338008 CCCACGGATCTT-CTCCTCGCTCAGCTTCGTG--TTCAGAAGACCGTAAAGCA---AACA 337955 Query 46632 TGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCC 46691 || |||||||| || || ||||| ||||| || |||||||| || || || | || Sbjct 337954 GGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTCAATCC 337895 Query 46692 AGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATAT 46751 |||||| || ||||| ||||| | ||| ||||| || |||| |||||| || ||||| Sbjct 337894 AGGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAAAATAT 337835 Query 46752 GCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCA 46811 ||||| || || || || || | ||||| || || | || | ||||| Sbjct 337834 CCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTCGATCCA 337775 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 | |||||||| ||||| || ||||||||||| || || || | || | ||| || Sbjct 337774 TCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCGTGAAATAG 337715 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931 | |||| || | |||||| | || || | | |||||| ||||| || || Sbjct 337714 ACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTACATCTCGGA 337655 Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991 ||||||||| |||||||| |||||||||||||| || | |||||| | | ||| || Sbjct 337654 ATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGAGACCTGGAC 337595 Query 46992 CTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAA 47051 |||| | ||||| | | || ||||||| || || ||||| || ||||| || Sbjct 337594 CTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCCGCAAAGAA 337535 Query 47052 TGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGT--CAGTTTATTCCAGTCATTG 47109 || | || || |||| |||| || | | | || ||| | |||| || || Sbjct 337534 AGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCC---CAATG 337478 Query 47110 A----TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 | |||||| || | |||||| || || || |||||||| |||||||| ||||| || Sbjct 337477 ACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGCTTTCTT 337418 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 ||||| | |||||| || |||| | ||||||||| || Sbjct 337417 GTACATTTCCCATATCTCCGGATAATTGATCGGAAACAT 337379 Score = 167 bits (184), Expect = 3e-36 Identities = 387/581 (67%), Gaps = 3/581 (1%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| || || || || || |||||||| ||||| || |||||||| || || || Sbjct 359146 AAACAGGCGAAGTCGCAGTGGAGGCCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTC 359205 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || |||||||| || || || || || ||||| ||||| || ||| |||||| || Sbjct 359206 AGTCCAGGCATCAGACCGCGTTTCTTCAGCCAGAATATCGCACAGAAGCTTCCAGAGAAA 359265 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 ||||| ||||| || || || || |||| ||||| | || | || || Sbjct 359266 AATATCCCTTCCACGCAAGCAAAAGCCACAATCCTCTCAGCAAAAGACTCCGCACCATCG 359325 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | |||||||| ||||||||||| || || || || || || | || | Sbjct 359326 ATCCATCGCATCGCCCAATCCGCCTTTTTCTTCACGCAGGGAATAGTCTCCACGGCGTGG 359385 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| |||| || | ||||| | || || | || |||||| ||||| Sbjct 359386 AAGAGACGAGTTTTCTCTGTGTTGTCTTTGATGTAACACTCCAATAGAAGACTGTACATC 359445 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 |||||||| ||||| || ||||| ||||||||||| || || | ||| || | | | Sbjct 359446 TCTGAATGGATGTTCTCGATAGCGATCTGAAATCCATAGAACGCGCGTGCCTCCGAGACC 359505 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || |||||| | ||||| | | || |||||| || || || || || ||| Sbjct 359506 TGGACCTCTTTCATGAATCGAACGGCCAGATTCTCGAGAACGATGCCGTCGGATGCCGCA 359565 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA--GTTTATT-CCAG 47103 || || || | || || |||| || | || | | || | || | || |||| Sbjct 359566 AAGAAAGCGAGAACGTGAGTAATGAAGTGACGCTCGTTGTCGGTAAGGGTGTGTTCCCAG 359625 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 | | |||| | || | ||| || ||||| || ||||| || ||||| || ||||| Sbjct 359626 TGACGCGTATCATGGGACAGATCAACCTCTTCGGCCGTCCAAAAGGACGCTTCAGCTTTC 359685 Query 47164 TTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 |||||||| | ||||| || |||| | ||| ||||| || Sbjct 359686 TTATACATCTCCCATAACTCTGGATACTTGATTGGAAACAT 359726 >seq2201 Length=583503 Score = 140 bits (154), Expect = 5e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | |||||||| ||| | ||||| |||||||||| |||||| Sbjct 456660 CCTCCTTGGTCAACATAACGGGCAGTGTCATTGAACACTCTTAACATTGGAACAATGCCA 456601 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || ||||| || ||| |||||||| ||| |||||||||||| | ||| Sbjct 456600 TTTGACGTCCCATTGGTCCCACGGATATAACTGCCAGTGGCACGAATATTATGCACAGAA 456541 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | |||||||| ||||| ||| ||||| |||||| ||| | |||||||| || Sbjct 456540 ACACCTATTCCCCCTGCAGATTTGCTGATTACAGCACACTCTTTAAGAGTGTCATATATT 456481 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| ||||| ||||| ||||| | ||| ||||| ||| Sbjct 456480 CCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAACTA 456439 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796 || || ||||| |||||||||| ||||| || || | | |||| ||||| || | | Sbjct 458486 AAAACCCTTCGGCTGTAAATATTTGATGTATAAGGCTCAAAACATTCGTTGTTACCAAGA 458427 Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856 ||||| |||||||| || ||||||||||| || | | | ||||| | ||||||| Sbjct 458426 ATTTGGCTGGTTGAAGCTGTTGGCATAGGTGCTACAAGAAGAGAATTTCGAACACCATGT 458367 Query 75857 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAG 75916 | || || || ||| ||||||||||| |||| || || ||||||| ||| Sbjct 458366 TTGGAAATATTCGCTCTTAATGCAGTCCAATCCCAACGATCAGAAGGGACAACATTCCAC 458307 Query 75917 AGATCGTATTGTAGAATTCC 75936 | ||| | ||| |||| ||| Sbjct 458306 ATATCATGTTGAAGAACTCC 458287 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 76261 AAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATA 76320 |||| | |||| || |||||||| ||||| ||||| ||| |||| | | | | | Sbjct 457639 AAACGTGGTAAG-GCAATAGATGCCAGATTGCAAACTGCTGTTTCATCTGGACTAGTGAA 457581 Query 76321 TTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCT 76380 || |||||||| ||||||| ||| | ||||||| ||||||||||||||||| ||||| Sbjct 457580 TTCAATTATCTCTGTGCATAAATTTGAAGACTTGATTGTTCCAAGATTTTGTTGATTGCT 457521 Query 76381 CTTTTTGTTACATGAGTCCT 76400 ||| | || || | |||| Sbjct 457520 TTTTCTATTGCAAGTATCCT 457501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712914544776960