Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq59 114 1e-20 >seq59 Length=545433 Score = 114 bits (126), Expect = 1e-20 Identities = 365/563 (65%), Gaps = 6/563 (1%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| || |||||||| || || ||||| || || |||||||| || || || || Sbjct 337959 AAACAGGCGAAATCACAGTGGAGACCTTCGTCTCTCGATATCAATTCGTTGGAGAAGGTC 337900 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 ||||| ||||| | || |||||||| | ||| ||||| ||| || ||| || || Sbjct 337899 AATCCAGGCATCAGACCACGTTTTTTTAACCAGAATATCGCACAGAAACTTCCAGAGAAA 337840 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 || || || || || ||||||||||| | | | | || | | | || Sbjct 337839 AATATCCCTTCCACGCAAGCAAAGGCCACGATCCTCTCAGCGAAAGACTCCGCACCGTCG 337780 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 |||||| | | ||||| |||||| ||||||||| ||| || || | || Sbjct 337779 ---ATCCATCGCATCGCCCAATCCGCCTTCTTTTTTACACAAGGAATAGTCTCCACGGCG 337723 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 | || ||| |||||| ||| | |||| | || || || | || | ||| ||| Sbjct 337722 TGAAATAGACGAGTTTTCTCTGCGGAATCTTTGATGTAACACTCCAGGAGAAGACTGTAC 337663 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 || || |||||||| || |||||||| |||||||| || || || | ||||| || Sbjct 337662 ATCTCGGAATGAATGTTCTCAATAGCGATCTGAAATCCGTAGAACGCACGTGCTTCTGAG 337603 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | || || || || | |||| || | ||| || || |||||||| || Sbjct 337602 ACCTGGACCTCTTTCATGAATCGAACGGCCAGATTCTCAAGGACGATACCATCGGACGCC 337543 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT--CAGTTGATAAT-TTTTTC 23982 ||||||||||| ||||| | | || ||||| | || | | ||| | | | || | Sbjct 337542 GCAAAGAAAGCGAGAACGTGAGTAATGAAATGGCGCTCGTTGTTGGTGAGAGTATGTTCC 337483 Query 23983 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCA 24042 |||| | | |||||| || | ||| || || || | ||||| ||| ||| ||| Sbjct 337482 CAATGACGAGTATCTTGAGACAGATCTACCTCCTCGGCCGTCCAGAAAGACGCCTCGGCT 337423 Query 24043 CGCTTATACATTAGCCAAATATC 24065 ||| |||||| ||| || || Sbjct 337422 TTCTTGTACATTTCCCATATCTC 337400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521473476559200