Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq486 113 4e-20 seq841 98.7 9e-16 >seq486 Length=444201 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || || |||||| ||| ||||||||||| || |||| | || || Sbjct 173634 AGTCGAAGCACAAGGTGTAGCGTGGACTCTTTCTGAATGTTGTAATCGGCCAAAGTACGA 173693 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | ||||||||| || || |||| ||||| ||||| | || | | ||| Sbjct 173694 CCATCTTCTAACTGCTTGCCTGCAAAGATCAAACGCTGCTGGTCTGGTGGGATACCTTCC 173753 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || || ||| ||||||| | ||| | | | ||||| |||||| ||||| | ||| Sbjct 173754 TTATCT-TGAATTTTTGCCTTAACATTGTCGATGGTGTCAGACGACTCAACCTCTAACGT 173812 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || |||||||| |||||||||||||| Sbjct 173813 GATTGTTTTGCCAGTGAGCGTCTTGACGAAAATCTGCAT 173851 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| ||||| || ||| ||| ||||||||||||||||||| | || || | || || Sbjct 170053 CACAAGATGTAGTGTGGACTCTTTCTGAATGTTATAGTCGGCCAAAGTCCGGCCATCTTC 170112 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | |||||||| || || |||| ||| |||||||| | || | | ||||| | | | Sbjct 170113 TAATTGCTTGCCTGCAAAGATCAAGCGTTGTTGGTCTGGTGGGATACCTTCCTTAT-CTT 170171 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || ||||||| | ||| | | ||||| |||||| ||||| | || || |||| Sbjct 170172 GAATTTTTGCCTTAACATTATCAATGGTGTCAGACGACTCAACCTCTAAAGTGATGGTTT 170231 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| |||||||||||||| Sbjct 170232 TTCCAGTGAGGGTCTTGACGAAAATCTGCAT 170262 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||| ||||||||||| ||||| | Sbjct 173397 CCACCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCC 173456 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | |||||| || || || |||| ||||| ||||| | || Sbjct 173457 AAAGTGCGACCATCTTCCAACTGCTTACCTGCAAAGATCAAACGCTGCTGGTCTGGTGGG 173516 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| || ||| |||||| | ||| | | | ||||| |||||| || Sbjct 173517 ATACCTTCCTTATCT-TGAATTTTTGTCTTAACATTGTCGATGGTGTCAGACGACTCAAC 173575 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || ||||| || || |||||||| |||||||||||||| Sbjct 173576 CTCTAACGTGATGGTTTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 173623 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| |||||||| || ||||| || | ||||| || | || || Sbjct 158733 ACAAGATGAAGTGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGACCATCCTCC 158674 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||| ||||| || |||| | ||| ||||| | || | | ||||||||| || Sbjct 158673 AACTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCT-TG 158615 Query 41774 ATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | || | || ||||| ||||||||||| | || || || || Sbjct 158614 AATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGTCTT 158555 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||||| ||||||||||| |||||||| Sbjct 158554 ACCAGTCAGAGTCTTTACGAAGATCTGCAT 158525 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| ||||| || ||||| || || | ||||| || | || || Sbjct 158961 ACAAGATGAAGTGTGGATTCCTTTTGGATGTTGTAATCTGCAAGGGTCCGACCATCCTCC 158902 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||| || || || |||| | ||| ||||| | |||| | ||||||||| || Sbjct 158901 AACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGAGGAATTCCCTCCTTGTCT-TG 158843 Query 41774 ATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | || | || ||||| ||||||||||| | || || || || Sbjct 158842 AATCTTCGCCTTCACATTGTCAATTGTGTCCGATGACTCCACCTCTAAAGTGATGGTCTT 158783 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||||| ||||||||||| |||||||| Sbjct 158782 ACCAGTCAGAGTCTTTACGAAGATCTGCAT 158753 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||| || || || ||| ||| ||||||||||| ||||||| | || || | Sbjct 169363 ACGGAGCACAAGGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCGGCCAAAGTACGACC 169422 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCT 41765 || || | ||||| || || || |||| ||| || ||||| | |||| ||| |||| Sbjct 169423 ATCTTCCAATTGCTTTCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATAGCT-TCCT 169481 Query 41766 TGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 | | | ||| | ||||| | || | | | ||||| |||||| || || | || Sbjct 169482 TAT-CTTGAATCTTTGCCTTTACATTGTCGATGGTGTCAGACGACTCAACTTCTAAAGTG 169540 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || |||||||| |||||||| ||||| Sbjct 169541 ATGGTTTTGCCGGTGAGCGTCTTGACGAAAATTTGCAT 169578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || ||||| || ||||| || || | Sbjct 159207 CCACCACGAAGACGGAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCTGCA 159148 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || | |||||| ||||| || |||| | ||| ||||| | || Sbjct 159147 AGGGTCCGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGG 159088 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || |||| | | | | ||||| ||||| || Sbjct 159087 ATTCCCTCCTTGTCTTGGATCTTCGCTTTCACATTATCA-ATTGTGTCCGAAGACTCAAC 159029 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| ||||||||||| |||||||| Sbjct 159028 CTCCAGTGTGATAGTCTTGCCAGTCAGAGTCTTTACGAAGATCTGCAT 158981 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||| || ||||| || ||||||| | ||||| | || || Sbjct 169598 ACAAGGTGTAGGGTGGACTCTTTTTGAATATTGTAGTCGGCCAAAGTGCGACCATCTTCC 169657 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||| ||||| || || |||| ||| || ||||| | || | || ||||| || | Sbjct 169658 AACTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGG 169717 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||||| ||| ||| | | | ||||| | |||| ||||| | || || ||||| Sbjct 169718 ATTTTCGCCTT-AACATTGTCGATGGTGTCAGACAACTCAACCTCTAAAGTGATGGTTTT 169776 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| |||||||||||||| Sbjct 169777 TCCGGTGAGTGTCTTGACGAAAATCTGCAT 169806 >seq841 Length=1035533 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | ||||| || || || |||||||||||| |||||||| | Sbjct 649929 CCTCCCCGTAGACGGAGAACCAGGTGAAGAGTTGACTCCTTCTGAATATTATAGTCAGCA 649988 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| |||||||| |||| ||||| ||||| | || Sbjct 649989 AGTGTACGTCCATCCTCAAGCTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGG 650048 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| | || || | ||| | | || || || || || Sbjct 650049 ATTCCTTCTTTGTCC-TGAATCTTGGCCTTCACGTTATCGATCGTATCCGAAGATTCGAC 650107 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || ||||| || ||||| || || || || || ||||||||||| Sbjct 650108 CTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATGTT 650158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462291124833600