Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq93 134 3e-26 seq131 132 1e-25 seq12 107 4e-18 seq29 105 1e-17 seq468 104 5e-17 seq214 104 5e-17 seq108 104 5e-17 seq91 104 5e-17 seq39 104 5e-17 seq38 104 5e-17 seq18 104 5e-17 seq11 104 5e-17 seq27 102 2e-16 seq103 98.7 2e-15 >seq93 Length=1192474 Score = 134 bits (148), Expect = 3e-26 Identities = 311/459 (68%), Gaps = 16/459 (3%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||| | | || || || || || | ||||| || |||| Sbjct 325373 TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTC 325314 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | | || |||||| Sbjct 325313 TGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAG 325254 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCAT--CAACAGTTCG-GCGAGCT-TATG-TATTCAA 230347 ||||| |||||||||||||| || | || | || || || |||| | ||| Sbjct 325253 CTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCGTGCCTCCTCTATGATCTTC-- 325196 Query 230348 AGCTCCAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405 ||| |||||| || | ||| | ||| | || | | || || || || Sbjct 325195 ---TCCGCGTCAAGCTCGACGAGTCGCGC--GTCCGCGAGATAGTCGCCGACGCCGTCGA 325141 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGCTG 230464 | || |||||| | || ||||| | || || ||| || | |||||||||| | Sbjct 325140 TATAGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTG-CGCGCTAGTCGGCATGAACGGCG 325082 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524 || ||| | ||||||||||| ||||| ||||||||| | | | || || || || Sbjct 325081 TGCTCATGAGTCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCCACA 325022 Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 |||| |||||||| ||||| || | | |||||||| || || || || || | Sbjct 325021 AGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTTATCTCCCTCCAGGGCA 324962 Query 230585 AGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||||||| ||||| ||| | || ||||||| Sbjct 324961 AGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTATCAGA 324923 >seq131 Length=616296 Score = 132 bits (146), Expect = 1e-25 Identities = 311/461 (67%), Gaps = 9/461 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || ||||||||||| ||||| | | || || || || ||| | || || || ||| Sbjct 272885 TTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATTTTCTTCTCGGGCTCGTTC 272826 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 272825 TGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 272766 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGC-TTATGTATTCAAAGCT 230351 ||||| ||||||||||| || || | |||| || || || | || || Sbjct 272765 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCG-CGTGCCTTCTCTACGACCTCCT 272707 Query 230352 CCAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || |||||| || | || | ||| | ||| | | || || || || | | Sbjct 272706 CCGCGTCAAGCTGGACGAGTCCCGC--GTCCGCGAGATCGTCGCCGACGCCGTCGACATC 272649 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || |||||| | || ||||| |||| || ||| || | |||||||||| | || Sbjct 272648 GAGCGCGAGTTCGTCTGCGACGCGCTTCCCTG-CGCACTCGTCGGCATGAACGGCGTGCT 272590 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 |||| | |||||| |||| ||||| ||||||||| | | | || | || || |||| Sbjct 272589 TATGAGCCAGTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGCTTTGGGGCACAAGAA 272530 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| ||||| || | | ||||||||||| || || || || ||||| Sbjct 272529 GATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGTAAGAC 272470 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 |||||||||||| ||||| ||| | || || ||| |||||| Sbjct 272469 CAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCCT 272429 >seq12 Length=4890841 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 1275895 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1275954 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 1275955 GCCCCACGGTGGGC 1275968 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1447118 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1447177 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1447178 CCCACGGTGGGC 1447189 >seq29 Length=2799229 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 2483880 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2483939 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2483940 CCCCACGGTGGGC 2483952 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2094757 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2094816 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2094817 CCCACGGTGGGC 2094828 >seq468 Length=8586 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7715 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7774 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7775 CCCACGGTGGGC 7786 >seq214 Length=123435 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 104962 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 105021 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 105022 CCCACGGTGGGC 105033 >seq108 Length=920742 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 652916 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 652857 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 652856 CCCACGGTGGGC 652845 >seq91 Length=1208344 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 142900 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 142959 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 142960 CCCACGGTGGGC 142971 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 457647 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 457706 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 457707 CCCACGGTGGGC 457718 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||| |||||||||||| || || |||| || ||||||||||| |||||| Sbjct 146420 GCCCGTCTAGCTCAATCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGCTCGAGC 146361 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 146360 CCCACGGTGGGC 146349 >seq39 Length=2543792 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2108074 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2108015 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2108014 CCCACGGTGGGC 2108003 >seq38 Length=2547764 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1938443 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1938502 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1938503 CCCACGGTGGGC 1938514 >seq18 Length=3692672 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2925001 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2925060 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2925061 CCCACGGTGGGC 2925072 >seq11 Length=4958479 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1033074 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1033133 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1033134 CCCACGGTGGGC 1033145 >seq27 Length=2856388 Score = 102 bits (112), Expect = 2e-16 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1383658 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1383717 Query 165769 CCCCACGATGG 165779 ||||||| ||| Sbjct 1383718 CCCCACGGTGG 1383728 >seq103 Length=1010859 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 250953 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 251012 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 251013 CCCACGGTGGGC 251024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057664259981180