Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq93 105 1e-17 seq49 102 2e-16 seq4 98.7 2e-15 seq131 95.1 3e-14 >seq93 Length=1192474 Score = 105 bits (116), Expect = 1e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 |||||| | || | ||||| || ||||||||||| |||||||| || || | |||||| Sbjct 324928 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCATC 324987 Query 157319 CACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAG 157378 || ||||| ||||||||| |||||||| ||| | || |||||| | ||| | | Sbjct 324988 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCGG 325047 Query 157379 TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACG 157438 || || || |||| |||||||| ||||| | || | || |||| |||||| | Sbjct 325048 TCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCAG 325107 Query 157439 GGAAGCGCCGACG-AAATGAATTCGCACTC 157467 || |||| || || | | ||| |||| ||| Sbjct 325108 GGGAGCG-CGTCGCAGACGAACTCGCGCTC 325136 >seq49 Length=2122476 Score = 102 bits (112), Expect = 2e-16 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 |||| ||| |||| |||| | || || || || || | ||||| ||||| || | Sbjct 612750 TGGATAGCGAGATTATTTACGATAGGGACTTCGATTATGACTACTTTGGGTTCAAGACTC 612691 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 |||||| || || ||| | || ||| ||| ||| | || ||| || || ||||||| Sbjct 612690 TGGAGAGGTCTTACCTCTTGAAGCTTGGTGGGAAGGTTGTCGAAAGACCACAACACATGT 612631 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTA 248960 | ||| |||| | || ||||| |||||||||||||| || | | ||| || | || || Sbjct 612630 TAATGAGAGTTTCAGTGGGGATACACAAGGATGACATTGA-ATC-TGCCATCAAAACATA 612573 Query 248961 -CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 || | | ||| | | |||||| | |||||||| |||| ||||| ||||| || |||| Sbjct 612572 CCATCTG-ATGTCTCAGCGCTGGTTTACACATGCTTCACCAACGCTTTTCAATGCTGGTA 612514 Query 249020 C 249020 | Sbjct 612513 C 612513 >seq4 Length=6248241 Score = 98.7 bits (108), Expect = 2e-15 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 |||| ||| |||| |||| | || || || || || | ||||| |||||||| | Sbjct 1174345 TGGATAGCGAGATTATTTACGATAGGGACTTTGACTATGACTACTTTGGGTTCAAAACTC 1174404 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| || || ||| | || ||| ||| ||| | || ||| || |||||||||| Sbjct 1174405 TCGAGAGGTCTTACCTCTTAAAGCTTGGTGGTAAGGTTGTTGAAAGACCACAGCACATGT 1174464 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTA 248960 | ||| |||| | || ||||| || | ||||||||| || | | ||| || | || || Sbjct 1174465 TAATGAGAGTTTCAGTGGGGATACATATGGATGACATTGA-ATC-TGCCATCCAAACATA 1174522 Query 248961 -CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 || | | ||| | | |||||| | |||||||| |||| ||||| ||||| ||||| | Sbjct 1174523 CCATCTG-ATGTCTCAGCGCTGGTTTACACATGCTTCACCAACGCTTTTCAATGCCGGCA 1174581 Query 249020 C 249020 | Sbjct 1174582 C 1174582 >seq131 Length=616296 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 272439 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCAT 272498 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | || ||||| | ||| | Sbjct 272499 CCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGTGCCCCAAAGCCATTAGCAGGCG 272558 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| || ||||| |||| | || | || |||| ||| ||| Sbjct 272559 GTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGCGCA 272618 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 |||||||| || || | | ||| |||| ||| Sbjct 272619 GGGAAGCG-CGTCGCAGACGAACTCGCGCTC 272648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073604252549248