Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq69 91.5 1e-13 seq8 91.5 1e-13 >seq69 Length=1663458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || || |||| |||||| || || ||||| ||||||||||| || || Sbjct 149385 TCCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 149444 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| |||| || ||||| || || ||| Sbjct 149445 TAACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGG 149504 Query 18218 CACGCCTTCCTTATC 18232 | ||| ||||| || Sbjct 149505 AATGCCCTCCTTGTC 149519 >seq8 Length=5380884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 || || || |||| ||||||||| || |||||||||||||| || || || | |||| | Sbjct 1717766 AGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTT 1717825 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| || || ||| | || || ||||| || || ||| | ||| ||| Sbjct 1717826 CCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCC 1717885 Query 18228 TTATC 18232 || || Sbjct 1717886 TTGTC 1717890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379289510316570