Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq45 91.5 1e-13 seq37 89.7 5e-13 seq8 87.8 2e-12 seq68 86.0 6e-12 >seq45 Length=2202424 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| ||||| | ||||| | || || ||||| || || Sbjct 1623209 GTAGACTCCTTCTGTATGTTGTAATCAGCGAGTGTGCGCCCATCCTCAAGCTGCTTGCCG 1623150 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| ||||| || ||||| ||| || || Sbjct 1623149 GCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 1623090 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||||||||||| ||| | ||||||||||| | || Sbjct 1623089 ACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 1623030 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 1623029 TTGACGAAGATCTGCATA 1623012 >seq37 Length=2664577 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| | || |||||||| || ||| Sbjct 1936461 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCCATCCTCGAGCTGCTTGCCA 1936402 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || ||||| ||||| || ||||| ||| || || Sbjct 1936401 GCGAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1936342 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||||||||||| ||| | |||||||| || | || Sbjct 1936341 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 1936282 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1936281 TTCACGAAGATCTGCAT 1936265 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| | ||| |||||||| || || Sbjct 1936689 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGCCCGTCCTCGAGCTGCTTGCCG 1936630 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || ||||| ||||| || ||||| ||| || || Sbjct 1936629 GCGAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1936570 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | ||||||||| | ||| | ||||||||||| | || Sbjct 1936569 ACGTTGTCAATGGTATCAGAAGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 1936510 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1936509 TTCACGAAGATCTGCAT 1936493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || || | |||| | ||| || ||||| Sbjct 1937152 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCCGTCCTCAAGCTG 1937093 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | ||||| || || || || ||||| ||||| ||| || Sbjct 1937092 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTT 1937033 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| | | ||||||||| | ||| | ||||||||||| Sbjct 1937032 GGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTGCCGGT 1936973 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 1936972 GAGGGTCTTAACGAAGATCTGCAT 1936949 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | |||| ||||| ||||| || ||| Sbjct 1937373 GTGGACTCCTTCTGAATGTTATAGTCTGCAAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 1937314 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 1937313 GCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 1937254 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||||| ||| | ||||||||||| | || Sbjct 1937253 ACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 1937194 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 1937193 TTAACAAAGATCTGCATA 1937176 >seq8 Length=5380884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTC 139614 || ||||||| || ||||||||||||||||||||||| ||| | ||| || ||||| Sbjct 1717775 ACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCT-AATGTTCTTCCATCTTC 1717833 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 | || ||||||||| | ||||| | |||||| || || || ||||| || ||||| Sbjct 1717834 CAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 1717890 >seq68 Length=1664768 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | |||| ||| || || || || ||| Sbjct 547195 GTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGTTGCTTGCCA 547136 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| |||||||| || || ||||| || ||||| ||| || || Sbjct 547135 GCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 547076 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||||| ||| | ||||||||||| | || Sbjct 547075 ACGTTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 547016 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 547015 TTCACGAAGATCTGCAT 546999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495990917371200