Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 105 1e-17 seq49 100 4e-16 seq93 98.7 1e-15 seq131 89.7 7e-13 >seq4 Length=6248241 Score = 105 bits (116), Expect = 1e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | ||| | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 1174905 CCACCTTGATCAACGTAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 1174846 Query 80155 TTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||| || ||||| || ||| || ||||| || ||| | || |||||||| || ||| Sbjct 1174845 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAACTGA 1174787 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 1174786 AACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGAT 1174727 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| || || |||||||| Sbjct 1174726 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 1174685 Score = 104 bits (114), Expect = 3e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 1174583 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 1174524 Query 80394 GTACGTCTCAATAGCTGATTCTATATC--CCATTGATGAATTCCTACCGCGACACGCATT 80451 ||| || | || || ||||| || || |||| ||| || || || | || | |||| Sbjct 1174523 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 1174466 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 ||||||||||| ||||||||||| | ||| | | || || | |||||| | || Sbjct 1174465 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 1174406 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 | |||||| || ||||| |||| || |||||| | ||||||||||| Sbjct 1174405 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 1174356 >seq49 Length=2122476 Score = 100 bits (110), Expect = 4e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 612190 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 612249 Query 80155 TTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||| || ||||| || ||| || ||||| || ||| | || |||||||| || ||| Sbjct 612250 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAACTGA 612308 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 612309 AACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGAT 612368 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| ||||| || || |||||||| Sbjct 612369 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 612410 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 612512 AGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 612571 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | || || ||||| || || | ||| || || || || | || | ||||| Sbjct 612572 GTATGTTTTGATGGCAGATTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 612630 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||| || |||||||| || | ||| | | ||||| | |||||| | |||| Sbjct 612631 ACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 612690 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || || ||||| |||| || ||||| | ||||||||||| Sbjct 612691 GAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCCTATCGTAAATAAT 612739 >seq93 Length=1192474 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||||||||||||| | || || |||||||| || ||||| Sbjct 325213 CACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 325272 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| || || || ||||| || |||| |||| || || || |||||||| Sbjct 325273 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAA 325331 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| || || || || | ||| Sbjct 325332 GATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTC 325367 >seq131 Length=616296 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 272725 CACGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 272784 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || || || || ||||| || |||| |||| || || || || ||||| Sbjct 272785 CCCGGCATGAGCCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAACGAGCCCGAGAAGAA 272843 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 || || || || ||| || || ||||| | ||| Sbjct 272844 AATGCCCTCGACGCAGGCGAACGCGACAAGACGCTC 272879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718162981049040