Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq131 176 7e-39 seq93 167 3e-36 >seq131 Length=616296 Score = 176 bits (194), Expect = 7e-39 Identities = 402/588 (68%), Gaps = 19/588 (3%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || |||| ||| | | || ||||| | ||||| ||||| |||||| | Sbjct 273304 CCATGTTCCCGATCAAGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCGT 273245 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| || | ||||| | | || | Sbjct 273244 TCTGGACAGCCGAGGAGGTGGACCTCTCCGCCGACGTGCGGCACTGGGACGCCGCGCTCA 273185 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || ||||| | || || || ||| | | |||||||| |||| ||||| || Sbjct 273184 ACGCGGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCGTCCGACGGC 273126 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTG 125228 ||||| ||| || ||| | | || ||| | || || ||| || | |||| | Sbjct 273125 ATCGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGT---CCAGGTCGCCGAGGCG 273069 Query 125229 TCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || || ||||| ||||| ||| ||||||||| | |||||||| |||||||| Sbjct 273068 -CGCGCGTTCTACGGCTTCCAGATCGCCATTGAGAACATCCACTCGGAGATGTACTCGCT 273010 Query 125288 ACTGATTGACATGTACATTCGCGATC-CGCAACGTAAACACATGCTCTTTAACGCAATCG 125346 ||| | || | ||||| ||||| ||| | || || |||||| ||| || | Sbjct 273009 GCTGCTGGAGACCTACATCCGCGACGGCGCGGAG-AAGGACCGGCTCTTCCGCGCCATAG 272951 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | ||||| || | | || ||||| | ||| || || |||||||| | || | Sbjct 272950 AGACGGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGACCATGCGCTGGATCGAGGGCGGCG 272891 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| |||||||| ||||| ||| Sbjct 272890 AGCGCTTCG----CCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATTTTCTTCTCG 272835 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | ||| |||| ||||||| ||||||||||| ||||| |||||||| || || || Sbjct 272834 GGCTCGTTCTGCG-CCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCGGGCCTCACCTT 272776 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | |||||| | || || || ||||||||||| ||||| ||||| || Sbjct 272775 CTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC 272728 >seq93 Length=1192474 Score = 167 bits (184), Expect = 3e-36 Identities = 399/588 (68%), Gaps = 19/588 (3%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || |||| ||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 325792 CCATGTTCCCGATCAAGTACCCCCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 325733 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| | | | ||||| || || | Sbjct 325732 TCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACACCGCGCTCA 325673 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 325672 ATCCCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGC 325614 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCA--TTCCAGAGGTG 125228 || || || || ||| | | || ||| | || || ||| | | |||| | Sbjct 325613 ATAGTGCTTGAGAACCTGGCGTCGCGGTTCATGTCCGACGT---CCAGGTGGCCGAGGCG 325557 Query 125229 TCGTGC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || |||||||| ||||| ||| || |||||| | |||||||| |||||||| Sbjct 325556 -CGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCT 325498 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCG 125346 ||| | || | ||||| ||||| | || || || || || || ||| || | Sbjct 325497 GCTGCTGGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTGTTCCGCGCCATAG 325439 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || || || | | || ||||| | |||| || || |||||||| | || | Sbjct 325438 AGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGCG 325379 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| |||||||||||||||||| Sbjct 325378 AGCGCTTCG----CCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCG 325323 Query 125466 GGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || ||| |||| ||||||| ||||||||||| ||||| |||||||| || || || Sbjct 325322 GGATCTTTCTGCG-CCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTT 325264 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | |||||| | || || || |||||||| || ||||| |||||||| Sbjct 325263 CTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 325216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740950023453360