Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq22 134 3e-26 seq68 122 2e-22 seq8 102 2e-16 seq93 87.8 4e-12 seq69 87.8 4e-12 seq49 87.8 4e-12 >seq22 Length=3457718 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | ||| || || || | || || || ||||| || || || ||| Sbjct 1876779 ATTCCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCA 1876720 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || |||||||| || || ||||||||||| |||||||| || || || Sbjct 1876719 GCCAATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGG 1876660 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || |||||||||||||| || || ||||| || | || | | || | || Sbjct 1876659 GGGATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCGATCGT-GCCCGAGCTCTC 1876601 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| ||||| || || ||||||||||| Sbjct 1876600 AACCTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 1876550 Score = 104 bits (114), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 13/231 (6%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | ||||| || ||||| ||||| || ||| Sbjct 1877429 ATCCCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCA 1877370 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || ||||| || |||||||| || || | ||| || || | Sbjct 1877369 G-----------CCATCCTCAAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTAGT 1877321 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||| |||||||| || ||||| || | || || || | || Sbjct 1877320 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTG-AGCTCTC 1877262 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| || || || ||||| |||||||| Sbjct 1877261 AACCTCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 1877211 >seq68 Length=1664768 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| |||||||| || ||||| | || || | || || || || || || ||| Sbjct 547879 GTAGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTACCA 547820 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || || ||||| || || || || ||||| ||||| || || Sbjct 547819 GCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 547760 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || |||| || || ||||| |||||||| || Sbjct 547759 ACGTTATCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTTGCCAGTAAGCGTC 547700 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 547699 TTCACAAAGATCTGCAT 547683 >seq8 Length=5380884 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| ||||| || || | || | ||| || ||||| ||||| ||||| |||| Sbjct 1717755 TTCCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAG 1717814 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || ||||||||||| ||||| || || || || | Sbjct 1717815 CTAATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGG 1717874 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 1717875 GAATGCCCTCCTTGTCCTGAA 1717895 >seq93 Length=1192474 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || || || || ||||||||||| ||||| ||| ||||| ||| | |||||| | ||| Sbjct 325343 GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGC 325284 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 || ||||| || | |||||||| ||||| | || | | ||||| ||| | |||||| Sbjct 325283 CTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGC 325224 Query 269273 GACTTCGCTTG 269283 ||||| || || Sbjct 325223 GACTTTGCGTG 325213 >seq69 Length=1663458 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | || | || || ||||||||||| || || |||| Sbjct 149384 TTCCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAG 149443 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || |||||||| || ||||| || || || || | Sbjct 149444 CTAACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGG 149503 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 149504 GAATGCCCTCCTTGTCCTGAA 149524 >seq49 Length=2122476 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 165090 tttATACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATA 165149 |||| || ||| | ||||| ||| ||| ||||| | ||| ||||| |||||||| | Sbjct 1230840 TTTACACTGATGATGATGAGTGGTCTACCTGGAAGAGGATAGGAGATCCAGTTTTACACA 1230781 Query 165150 TAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAG 165209 |||| || ||| |||||||||||| ||| |||| || || ||| ||||||| | || | Sbjct 1230780 TAGAACTGCGAAAATGGGCAGATATCATGGTGATTGCTCCATTATCAGCAAATACCTTGG 1230721 Query 165210 CGAAGATA 165217 | ||| || Sbjct 1230720 CTAAGGTA 1230713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151224529486488