Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq19 129 5e-25 >seq19 Length=3678990 Score = 129 bits (142), Expect = 5e-25 Identities = 177/243 (73%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||| || || |||| | | || |||||||| | ||||||| | Sbjct 3409013 GCCGGTGGATCCGAACCCACCCTCGCCGCGCACGGTGGCGTCCAGGTCCTCCACCTCCGC 3409072 Query 5563 CACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTA 5621 || || || || | | | |||| ||||| |||||| || |||||||| | ||| | Sbjct 3409073 GACCTCCGGCGTGGCGATCAC-CTCGACGATCATCTGCGCGATGCGGTCGCCGGGCTTGA 3409131 Query 5622 CCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 | |||| || || |||| |||||| || | |||||||| |||||||||||| Sbjct 3409132 CGGCGAAGTCCACGT--CCGAGTGGTTGAAGAGGATGACGCCCACCGGGCCGCGGTAGTC 3409189 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||||| |||||||| ||||||||||||||| ||||||| | ||| || ||||| || || Sbjct 3409190 CGCGTCGATCACGCCGGCGCCCACGTCGATGGAGTGCTTCAGCGCGAGCCCGGACCGCGG 3409249 Query 5740 AGC 5742 || Sbjct 3409250 CGC 3409252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429992626179632