Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq45 89.7 4e-13 seq68 87.8 2e-12 seq4152 82.4 6e-11 >seq45 Length=2202424 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||||| || || ||| |||||| || |||||||| || || | || ||||||| Sbjct 1622766 CACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 1622707 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || || | || | ||||||||| ||| || | | ||||||||| Sbjct 1622706 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1622647 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || || || || | || ||| ||| | || ||||| Sbjct 1622646 GATCTTGGCCTTGACGTTGTCG--ATTGTGTCAGATGATTCCACCTCAAGGGTGATGGTC 1622589 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| || || ||||| |||||||| Sbjct 1622588 TTACCGGTGAGGGTCTTGACAAAGATCTGCAT 1622557 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | ||| | |||||||||||| Sbjct 1622987 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGCCCATCCTCCAGCTGC 1622928 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||| ||||| ||| || | | ||||||||| || || Sbjct 1622927 TTGCCGGCGAAGATGAGACGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 1622868 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | |||||| ||||| || ||||| || |||| Sbjct 1622867 GCCTTGACGTTGTCG--ATGGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGG 1622810 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || || || |||||||| Sbjct 1622809 TGAGGGTCTTGACGAAGATCTGCAT 1622785 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||||||||| | | ||| | ||||| |||||||| ||| | | Sbjct 1623204 CTCCTTCTGTATGTTGTAATCAGCGAGTGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAA 1623145 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||| ||| || | | ||||||||| || || ||||| Sbjct 1623144 GATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTT 1623085 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | ||||||| ||| | || ||||| || |||||||| || || || Sbjct 1623084 GTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 1623025 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 1623024 GAAGATCTGCAT 1623013 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | ||| || ||| |||||| ||||||||||| ||||| | | || || | |||| Sbjct 1623450 CACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTGCGGC-CATCCT 1623392 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | | || | ||||||||| ||| || | || |||||||||| Sbjct 1623391 CCAGCTGCTTCCCTGCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCT 1623332 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | || || |||| ||| ||| | ||| ||||| | Sbjct 1623331 GGATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGTGTGATGGTCT 1623272 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | || |||||||| |||||||| Sbjct 1623271 TGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1623241 >seq68 Length=1664768 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||| || |||| || | ||||||||||||||||| | || Sbjct 547873 TCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAA 547814 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| ||| || | | ||||||||| || ||| ||| | Sbjct 547813 ATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTA 547754 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | ||||||| || | || ||||| || || || || || |||||| Sbjct 547753 TCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTTGCCAGTAAGCGTCTTCACA 547694 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 547693 AAGATCTGCAT 547683 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| ||||| || || || |||||||||| ||||| || | Sbjct 547190 CTCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAA 547132 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||||||| || | | ||||||||| || || ||||| Sbjct 547131 AGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGT 547072 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | ||||| ||| | || ||||| || |||||||| || |||| Sbjct 547071 TGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 547012 Query 48714 CAAAAATCTGCATC 48727 | || ||||||||| Sbjct 547011 CGAAGATCTGCATC 546998 >seq4152 Length=1438 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||||||| || | Sbjct 373 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAA 432 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 433 GATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 492 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || || || || || || || || ||| Sbjct 493 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTC 550 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 551 ACGAAGATCTGCATCTTG 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421190690687786