Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq17 113 2e-20 seq56 107 1e-18 seq36 107 1e-18 seq27 107 1e-18 seq15 107 1e-18 seq1 107 1e-18 seq39 105 3e-18 seq29 105 3e-18 seq4 105 3e-18 seq106 104 1e-17 seq9 104 1e-17 seq127 102 4e-17 seq6 95.1 6e-15 seq12 91.5 8e-14 >seq17 Length=3850700 Score = 113 bits (124), Expect = 2e-20 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 804849 AATAAAAAATGTATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 804908 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||| |||||||||| |||||| Sbjct 804909 GACGCTCTAACCAGCTGAGCTAATAGGCCGT 804939 >seq56 Length=1942739 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 602818 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 602877 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 602878 CAACTGAGCTAATAGGCC 602895 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 788495 AACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 788554 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 788555 AACTGAGCTAATAGGCC 788571 >seq36 Length=2666425 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 386854 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 386795 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 386794 TGAGCTAATAGGCCGT 386779 >seq27 Length=2856388 Score = 107 bits (118), Expect = 1e-18 Identities = 83/96 (86%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||||| || ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 410742 TTAA-AAAAAAGGAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 410798 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||||||| ||||||||||||||| |||| |||| Sbjct 410799 ACGACGCTCTAACCAACTGAGCTAATAGGCC-TCGA 410833 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2856304 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2856363 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2856364 TGAGCTAATAGGCC 2856377 >seq15 Length=4350796 Score = 107 bits (118), Expect = 1e-18 Identities = 85/101 (84%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 11434 TAGAATTAATAA--AAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| ||| || |||| ||| |||||||||| | | |||||||| ||||||||| Sbjct 2761392 TAGAAATAAAAAGAAAAAGGAAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 2761333 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 2761332 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 2761292 >seq1 Length=8501895 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | || ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 1308479 TAAAAACTTAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 1308536 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 1308537 CGCTCTAACCAACTGAGCTAATAGGCC 1308563 >seq39 Length=2543792 Score = 105 bits (116), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 1588485 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 1588426 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 1588425 CCAACTGAGCTAATAGGCC 1588407 >seq29 Length=2799229 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 92917 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 92976 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 92977 CTGAGCTAATAGGCC 92991 >seq4 Length=6248241 Score = 105 bits (116), Expect = 3e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1961261 AACTTGGCCCATACAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1961202 Query 11512 CAACTGAGCTAATGGGCCGTCGACG 11536 ||||||||||||| |||| ||||| Sbjct 1961201 CAACTGAGCTAATAGGCCTGCGACG 1961177 Score = 102 bits (112), Expect = 4e-17 Identities = 74/85 (87%), Gaps = 5/85 (6%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | ||||||| ||||||||||||||||||||||||| Sbjct 1655733 AAAAA--AAAATGGCCCATGCAGG---CGAACCTGCGACCTTCGCGTTATTAGCACGACG 1655787 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1655788 CTCTAACCAACTGAGCTAATAGGCC 1655812 >seq106 Length=995091 Score = 104 bits (114), Expect = 1e-17 Identities = 78/90 (87%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| |||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 97485 AAGAAAAAA--AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 97542 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||| |||||||||| |||| Sbjct 97543 CGACGCTCTAACCAGCTGAGCTAATAGGCC 97572 >seq9 Length=5113091 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1594652 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1594711 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1594712 TGAGCTAATAGGCC 1594725 Score = 96.9 bits (106), Expect = 2e-15 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||||| | || || |||||| | | |||||||| ||||||||||||||||||| Sbjct 3603669 AAAAAAAAATAAGATAATGCCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 3603728 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||| ||||| |||| Sbjct 3603729 GCGACGCTCTGACCAACTGACCTAATAGGCC 3603759 >seq127 Length=666642 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 216801 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 216742 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 216741 CAGCTGAGCTAATAGGCC 216724 >seq6 Length=5579515 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| || ||| |||||||| | | | ||||| || |||||||||||||||||||||| Sbjct 453698 AAAGAAACAAGGATTGGCCCCCGCAGGTCTCGAATCTGCGACCTTCGCGTTATTAGCACG 453757 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 453758 ACGCTCTAACCAACTGAGCTAATAGGCC 453785 >seq12 Length=4890841 Score = 91.5 bits (100), Expect = 8e-14 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11445 AAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | ||||||||||| | | |||||||| ||||||||| |||||||||||||| Sbjct 3036024 AAAAATAATTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGTGTTATTAGCACGAC 3036083 Query 11504 GCTCTRACCAACTGAGCTAAT 11524 ||||| || |||| ||||||| Sbjct 3036084 GCTCTAACGAACTTAGCTAAT 3036104 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261453638913736