Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1065 609 3e-169 seq7681 437 1e-117 seq21 334 1e-86 seq46 313 3e-80 seq581 194 2e-44 seq9200 178 2e-39 seq1856 96.9 4e-15 >seq1065 Length=3091 Score = 609 bits (674), Expect = 3e-169 Identities = 743/1009 (74%), Gaps = 12/1009 (1%) Strand=Plus/Minus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 |||| |||||| | | |||| || || || ||||| || |||||||| ||| | || | Sbjct 2430 TGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 2371 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||||||||| || | || || ||| |||| || || || ||||| || | Sbjct 2370 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 2311 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| ||||| || ||||| ||||| || | |||||| |||||| | || || | Sbjct 2310 GGTATACCCATGGATTGGC---TAGTTCCTATTTAGAAGGCTGCAATTTCTTAACGGCGG 2254 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 | ||||| || |||||| || | | | || ||| | | ||||| ||||| || || Sbjct 2253 CGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCAGAAG 2194 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||| ||| | || |||| ||| | || || || ||||||||||| || |||| Sbjct 2193 CACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCC 2134 Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTA 138230 | ||||| ||| || || || |||||| | || || ||||| | |||| |||| | Sbjct 2133 ATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTT- 2075 Query 138231 GGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCG 138288 || | | || || || ||||| ||||||||||||| ||||| || || || || Sbjct 2074 --CAATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCCG 2017 Query 138289 TGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGG 138348 | ||||| || ||||| |||| ||||| ||||||||||||| || ||||| || | Sbjct 2016 TATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAG 1957 Query 138349 CAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408 |||| || || |||||| | | ||| | || || || ||||| ||||| | ||||||| Sbjct 1956 CAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCT 1897 Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468 ||||||||||||| || || || | | || | |||||||| || ||||||||||| | Sbjct 1896 TTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGG 1837 Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 |||| |||||||| ||| | | |||||||| || | ||||| || ||| ||| Sbjct 1836 CTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCTTTTA 1777 Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588 | || ||||||| |||||||| ||||||||||||||||||||||| | ||||| |||| Sbjct 1776 ACCCAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAA 1717 Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCG 138648 ||||||| |||||||| ||||| |||||| | || ||||||||||| ||||| |||| Sbjct 1716 TCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCG 1657 Query 138649 TCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGT 138708 ||| ||| | |||| ||| |||||| | |||| || ||||| |||||||| || | Sbjct 1656 TCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCT 1597 Query 138709 ATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACA 138768 |||| ||||| || || ||||| |||||||| |||||||||||||| ||||| ||||||| Sbjct 1596 ATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACA 1537 Query 138769 CCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTC 138828 |||| || || ||| | || || ||| | ||||| |||||||| || |||||| |||| Sbjct 1536 CCAAAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTC 1477 Query 138829 ACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | ||||| || | || ||||| || || | ||| | || |||||||| Sbjct 1476 ATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 1428 >seq7681 Length=829 Score = 437 bits (484), Expect = 1e-117 Identities = 445/580 (77%), Gaps = 0/580 (0%) Strand=Plus/Plus Query 135748 TTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTA 135807 ||||||| ||| || || ||||| |||||||| |||||||||||||||||| || | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 135808 CCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAA 135867 ||| |||| ||||| |||| |||||||||||| | || || ||||| ||||| || Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 135868 CTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGG 135927 || ||| |||| ||||||||||| |||||||| || |||||||| || |||||||| || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 135928 AGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTC 135987 || ||||| || ||||| ||||| || ||| |||||||||||| || | || ||||| Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 135988 TAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCA 136047 |||| | | | || || ||||| ||||| || | |||||||| || ||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 136048 AGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCA 136107 ||| ||||||||||| |||||||| |||||||| ||||| || ||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 136108 ATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGT 136167 |||||| ||||||||||||||||| ||||||| ||| | |||||||||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 136168 CGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTCAA 136227 || |||||||| |||| | || | ||| ||||| |||||||| ||||| ||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 136228 CTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGCT 136287 |||||||| || | || | ||||||| || | || || ||||| ||| | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 136288 GAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || |||||| ||| |||||||| || |||||||| ||| Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGT 580 >seq21 Length=3603864 Score = 334 bits (370), Expect = 1e-86 Identities = 463/641 (72%), Gaps = 8/641 (1%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | | | | || || ||| | || | || || || | |||||||| || Sbjct 2753401 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTG 2753459 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | |||||| | || |||||||| || || Sbjct 2753460 ATGATCCCTAC-CTTATTGACTGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCTCC 2753518 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || || |||||| ||||||| |||| || ||||| || Sbjct 2753519 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAA 2753578 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCT--AGCAACGCCATCGGCCTTCACTTCTATCCC 135610 || ||||||||||| |||| |||| | ||| || ||| | | || || || || Sbjct 2753579 TATTATCTCTGGTGCCATTATTCCTTTTTCTGCA--GCGATCAGATTGCATTTTTACCCA 2753636 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 | || ||||| || | | ||||||| ||| |||| ||||||||||||| | | ||| | Sbjct 2753637 CTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATT 2753696 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | |||||| | | ||||| | ||| |||||||| || |||||||| || Sbjct 2753697 GTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGA 2753756 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 | |||||||||| ||||||||| ||| || || ||| | |||||||| |||||||| Sbjct 2753757 TGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACA 2753816 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 ||| ||||| || ||||||| ||| ||||| ||| | |||||||| | | || Sbjct 2753817 GCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGA 2753876 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| ||| |||| ||||||||| | |||||||| || | |||| Sbjct 2753877 ATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCAT 2753936 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || || ||||| || || || ||||| || ||||| ||||| || ||| |||||||||| Sbjct 2753937 CCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCAT 2753995 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGA 136011 | || | || ||||||||| | | | ||||| ||||| Sbjct 2753996 AGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 313 bits (346), Expect = 3e-80 Identities = 354/473 (75%), Gaps = 1/473 (0%) Strand=Plus/Minus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 |||||| | || ||||| || || | ||| | |||||||| || || ||| | ||| || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAAC 135586 ||||||| || | || ||||| || || |||||||||| |||| || || | Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 135587 GCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATAT 135646 || ||||| | || || || || || ||||||||||| ||||||||||| ||| |||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 135647 AATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATG 135706 ||||||||||||||| | ||| | || | || ||| ||| |||| | ||| ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 1370594 Query 135707 GGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTAC 135766 ||||| ||||||||||| || | | |||||||||| ||||||||| ||| || || Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 135767 TCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCT 135826 ||||| |||||||| |||||||||||||||||| || | ||| | | || ||||| | Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 135827 TTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAG 135886 ||| |||||||||| | | || || ||||| ||||| |||| ||| |||| ||| || Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 135887 GCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGT 135939 | ||| |||||||| || |||||||| || |||||||| || || ||||| || Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq581 Length=5673 Score = 194 bits (214), Expect = 2e-44 Identities = 263/361 (73%), Gaps = 17/361 (5%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | || |||||||| ||||| || || | || ||||| || || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| | |||||||||||||| | Sbjct 5373 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 5430 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || |||||||| || || || || |||||| |||||||| || | || ||||| | Sbjct 5431 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 5490 Query 135552 ACATCAT-----CTCTGGTGCTGTTATCCCTTCTAGCAAC----GCCATCGGCCTTCACT 135602 | || || ||||||||| |||| ||| | | | || ||||| | |||| Sbjct 5491 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 5550 Query 135603 TCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATC 135662 | || || ||||||||||| ||| ||||||||||| |||| ||||| ||||||||| Sbjct 5551 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 5606 Query 135663 AACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAAC 135722 | ||| | || | |||||| | | ||||| | ||| |||||||| |||||||||| Sbjct 5607 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 5666 Query 135723 T 135723 | Sbjct 5667 T 5667 >seq9200 Length=658 Score = 178 bits (196), Expect = 2e-39 Identities = 218/295 (74%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | || |||||||| || || || || | || |||||||| || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | |||||| | || |||||||| || || Sbjct 413 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCC 471 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || || |||||| |||||||| || | || ||||| || Sbjct 472 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 531 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 || ||||||||||| |||| ||| || || ||||| | || || || || || Sbjct 532 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAAT 591 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTA 135667 ||||||||||| ||| ||||||| ||| |||| ||||||||||||||| | ||| Sbjct 592 TTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 646 >seq1856 Length=2117 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 135730 CCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTAC 135789 ||| ||||||||||| ||||||||| ||| || || ||||| |||||||| |||||||| Sbjct 2 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 61 Query 135790 TGCTGTTTTCCTGGTCTACCCCTTTGGACAAGG 135822 |||||||||| || | |||| |||| ||||| Sbjct 62 TGCTGTTTTCTTGATTGACCCTATTGGTCAAGG 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627875484614400