Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq7681 396 8e-106 seq21 289 8e-74 seq46 248 3e-61 seq9200 172 2e-38 seq581 167 7e-37 >seq7681 Length=829 Score = 396 bits (438), Expect = 8e-106 Identities = 450/601 (75%), Gaps = 2/601 (0%) Strand=Plus/Plus Query 19674 GTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGG 19732 || |||||| |||| || | |||| ||| |||||| ||||| | ||||||| |||| Sbjct 11 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTGG 69 Query 19733 GCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTT 19792 ||||| ||||| ||||||||||||| | || |||||||||||||| ||||||||| | Sbjct 70 TCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGAT 129 Query 19793 CGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 19852 |||||||| ||||| ||||| |||||||||||||| || |||||| | ||||| ||||| Sbjct 130 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGG 189 Query 19853 CGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCAT 19912 |||||||| || || || ||| ||||||||| || ||||| || || | || Sbjct 190 TGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 249 Query 19913 CAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGA 19972 || |||||| ||||| ||| ||| || | || || || || || ||||| ||||| Sbjct 250 CAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGA 309 Query 19973 GACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTC 20032 ||| ||||| ||||| ||||| ||||| || ||||| |||| || || ||||||||| Sbjct 310 GACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAG 369 Query 20033 TTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATG 20092 |||||| || |||||||||||||| ||||| | ||| ||| || || || || || || Sbjct 370 TTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTG 429 Query 20093 GCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCA 20152 | | || | | || || | |||||||| |||||||| |||||||| || || ||||| Sbjct 430 GTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCA 489 Query 20153 GTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGC 20212 || ||||||||| | | || | || || ||||||||| | | || | || Sbjct 490 ATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGC 549 Query 20213 TAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGC 20272 ||| || || | ||||| |||||||| || |||||||| |||||||| || || ||||| Sbjct 550 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACTTAGC 609 Query 20273 T 20273 | Sbjct 610 T 610 >seq21 Length=3603864 Score = 289 bits (320), Expect = 8e-74 Identities = 400/553 (72%), Gaps = 5/553 (1%) Strand=Plus/Plus Query 19335 TGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCC 19394 |||||||| || | ||||| ||| |||| | |||| ||| | ||||| ||||| Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCCGTATTTATTATCGCC 2753504 Query 19395 TTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 19454 || |||||||| || || |||||||| ||||| || |||||||| |||| || || ||| Sbjct 2753505 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTA 2753564 Query 19455 ATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTG 19514 || || |||||||||||||| ||||| || | |||| || || || || || Sbjct 2753565 ATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTG 2753624 Query 19515 CACTTTTATCCGATCTGGGAAGCCGGCACTT-TAGATGAGTGGTTATACAACGGCGGTCC 19573 || ||||| || | || ||||| |||| || | ||||| ||||||||||| || ||||| Sbjct 2753625 CATTTTTACCCACTTTGAGAAGC-GGCATTTGTTGATGAATGGTTATACAATGGTGGTCC 2753683 Query 19574 ATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTG 19633 | | | || |||| | ||||||||| | || ||||| || ||| | | || Sbjct 2753684 TTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATG 2753743 Query 19634 GGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACT 19693 |||||| || | || || ||| | || ||||| | || || ||| || | || | Sbjct 2753744 GGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGT 2753803 Query 19694 ATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATG 19752 |||| ||| ||| | ||||| | | ||||| ||| ||||| |||||| | ||| Sbjct 2753804 TGCAGCTGCTACAGCTAT-TTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATG 2753862 Query 19753 GTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACA 19812 ||||| || | || |||||||||||||| ||||||||| | |||||||| ||| | |||| Sbjct 2753863 GTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACA 2753922 Query 19813 ATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTT 19872 | ||||||| |||||| || ||||| | ||||| ||||| |||||||| || || || | Sbjct 2753923 ACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTAT 2753981 Query 19873 TCTCTGCTATGCA 19885 || ||||||||| Sbjct 2753982 TCAGTGCTATGCA 2753994 >seq46 Length=2187656 Score = 248 bits (274), Expect = 3e-61 Identities = 351/487 (72%), Gaps = 5/487 (1%) Strand=Plus/Minus Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442 ||||| ||||||| || ||||| | || ||||||| ||||| || || |||| || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAG-CAGTAGTTCCAAGCTCCAA 19501 | || || ||| | || |||||||||||||| ||||| | || || |||||| | Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTA-TTCCAACTTGTGC 1370714 Query 19502 TGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATA 19561 || || ||| |||| ||||| || || |||||||| | || | ||||| |||||||| Sbjct 1370713 GGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATA 1370654 Query 19562 CAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGC 19621 ||| || ||||| ||| | || |||| | || |||||| | | ||||| || Sbjct 1370653 CAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGT-GTAGCTTGTTATAT 1370595 Query 19622 TGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATA 19681 ||| | |||||||||| || | | | || ||| || ||||| || ||||| Sbjct 1370594 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 1370535 Query 19682 TACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGA 19740 | |||| || | |||| ||| |||||| ||||| | ||||| | | || ||||| | Sbjct 1370534 TTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTACGCTATCGGTCAAGGAA 1370476 Query 19741 GTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCC 19800 |||| |||||||||| || | || |||||||||||||| ||||||||| | |||||| Sbjct 1370475 GTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCG 1370416 Query 19801 AAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCG 19860 | | ||| ||||| |||||||||||||| || |||||| | ||||| ||||| ||| | Sbjct 1370415 AGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTG 1370356 Query 19861 GTGGATC 19867 ||| ||| Sbjct 1370355 GTGCATC 1370349 >seq9200 Length=658 Score = 172 bits (190), Expect = 2e-38 Identities = 212/290 (73%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| || || ||||| | || |||||||| || | ||||| ||| Sbjct 362 TGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 421 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| | ||||| ||||||| |||||||| || || |||||| Sbjct 422 ACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGAT 481 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || ||| | || |||||||||||||| ||| Sbjct 482 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 541 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || || ||| |||| ||||| || || |||||||| Sbjct 542 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 601 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 | || | ||||| ||||||||||| || ||||| ||| | || |||| Sbjct 602 GCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 651 >seq581 Length=5673 Score = 167 bits (184), Expect = 7e-37 Identities = 231/323 (72%), Gaps = 13/323 (4%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 5322 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 5381 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| || ||||| |||| || ||||| || || || |||||| Sbjct 5382 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGAT 5441 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA-----ATATTA 19473 || ||||| || |||||||| ||||| || || ||| | || ||||||| |||||| Sbjct 5442 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTA 5501 Query 19474 TTTCTGGAGCAGTAGTTCCAAGC----TCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 | ||||| || | |||| | | || || || ||| |||||||||| | | Sbjct 5502 TCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC----C 5557 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||||||||||||||| |||||||| ||| | || |||| Sbjct 5558 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 5617 Query 19590 TTCCACTTCTTAATAGGAGTAGC 19612 | ||||||||| | || ||||| Sbjct 5618 CTACACTTCTTACTTGGTGTAGC 5640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144421384134216