Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq7681 396 4e-105 seq21 266 5e-66 seq46 242 6e-59 seq9200 165 1e-35 seq581 129 9e-25 >seq7681 Length=829 Score = 396 bits (438), Expect = 4e-105 Identities = 453/609 (74%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 211944 TTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTA 212003 |||||| |||||| |||||||| ||||| |||| ||| ||||| ||| | |||| Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 212004 CCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAA 212063 ||| | ||||| || ||||| || |||||||||||||| || || || || ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 212064 CTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGG 212123 ||| ||| | |||||||| ||||| || |||||||||||||| ||||| || ||| ||| Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 212124 TGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATC 212183 ||| || ||| | ||||| || | ||||| ||||||||| ||||| | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 212184 TTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACA 212243 | | ||| | |||||||||| || || || | |||||||| || || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 212244 AGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCA 212303 ||| |||||||| |||||||| || ||||| || || || || ||| || | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 212304 GTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTAT 212363 ||||| ||||||||| | ||||||||||||| | || | |||||||| | Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 212364 CTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAA 212423 | | ||||| || || | ||||| | || |||||||||||||||||||| ||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 212424 CTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCT 212483 ||||||||||| || |||||| |||| ||| || |||||||| |||| | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 212484 TAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACT 212543 ||| | || || |||||||||||||| ||||||||| | ||||| ||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 212544 TGACTTAGC 212552 |||||||| Sbjct 601 AGACTTAGC 609 >seq21 Length=3603864 Score = 266 bits (294), Expect = 5e-66 Identities = 417/593 (70%), Gaps = 3/593 (1%) Strand=Plus/Plus Query 211615 TGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGC 211673 |||||||||||| | |||||||| | ||| | | ||||||| | ||||| | || Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACTTCCGTATTTATTATCGC 2753503 Query 211674 ATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATT 211733 ||||||||||| ||||| || ||||| || || || ||||| || || |||||| || Sbjct 2753504 CTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTT 2753563 Query 211734 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTT 211793 || ||||| ||||| || ||||||||||| || |||| | ||| || ||| | || Sbjct 2753564 AATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATT 2753623 Query 211794 ACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCC 211853 || || || || | || ||||| ||| | ||||||| ||| | |||||||||||||| Sbjct 2753624 GCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCC 2753683 Query 211854 TTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTG 211913 || || | | | | |||||| | | || | | || ||||| | | || Sbjct 2753684 TTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATG 2753743 Query 211914 GGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGT 211973 ||||||| | |||| ||||||||||||||||| |||||| |||||| | ||||| Sbjct 2753744 GGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGT 2753803 Query 211974 ATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGG 212033 |||| ||| ||| | ||| | | ||||| ||||| || || || | || Sbjct 2753804 TGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGG 2753863 Query 212034 TATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAA 212093 |||| ||||||| || || || || |||||||| ||| | |||||||| ||| | || || Sbjct 2753864 TATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAA 2753923 Query 212094 CATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATT 212153 |||||||| ||| ||||| || || |||||| || ||| | ||||| || | |||| Sbjct 2753924 CATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATT 2753982 Query 212154 CTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTG 212206 | ||||||||| |||| | || || ||| | ||| | || ||||||| Sbjct 2753983 CAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTG 2754035 >seq46 Length=2187656 Score = 242 bits (268), Expect = 6e-59 Identities = 337/471 (72%), Gaps = 1/471 (0%) Strand=Plus/Minus Query 211663 TTTATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTA 211722 ||||| | || ||||| ||||| | ||| | ||||| || || || || | || | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 211723 GCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 211782 |||||| || | ||||| ||||| || |||||||||| || ||||| ||| Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 211783 GCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTAC 211842 || ||||| || || || || || || |||||||| ||| |||||||||| ||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 211843 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATG 211902 |||||||||||||| || | | | | || ||| ||| | | | || ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 1370594 Query 211903 GGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTAT 211962 || | ||||||||||| | | || | ||||||| ||||||||| |||||| ||| Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 211963 TCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCA 212022 ||||| ||||| |||| ||| ||||| ||| | ||||| | ||||||| || Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 ||||| || |||||| ||||||| || || || || |||||||| ||| | |||||| | Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGT 212133 | ||| || |||||||||||||| ||||| || ||| |||||| || ||| Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 1370363 >seq9200 Length=658 Score = 165 bits (182), Expect = 1e-35 Identities = 213/289 (74%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || | | | | || | || |||||||||||| | Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATC-GTCTTTACATCGGATGGTTTGGTGTTTT 411 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || ||||||||||| | Sbjct 412 GATGATCCC-TACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCC 470 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || ||||||| || | ||||| |||| Sbjct 471 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 530 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || ||||||||||| || |||| |||| || ||||| || || || || || | Sbjct 531 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAA 590 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 | |||||||| ||| || ||||||| ||| | ||||||||||||||||| Sbjct 591 TTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTA 639 >seq581 Length=5673 Score = 129 bits (142), Expect = 9e-25 Identities = 211/298 (71%), Gaps = 17/298 (6%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| | Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 5371 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 5372 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCC 5430 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || ||||||| || | ||||| |||| Sbjct 5431 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 5490 Query 211748 ACATCAT-----CTCTGGTGCAGTTGTTCCATC----TTCAAACGCAATCGGTTTACACT 211798 | || || ||||||||| || |||| | ||| || ||||| || |||| Sbjct 5491 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 5550 Query 211799 TCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 | || ||| ||||||| ||| || ||||||||||| | |||||||| |||||||| Sbjct 5551 TTTACCCT----GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTA 5604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807436226930160