Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq7681 381 7e-101 seq1065 358 8e-94 seq21 228 9e-55 seq46 201 1e-46 seq9200 143 3e-29 seq581 132 5e-26 seq1856 89.7 6e-13 >seq7681 Length=829 Score = 381 bits (422), Expect = 7e-101 Identities = 452/610 (74%), Gaps = 2/610 (0%) Strand=Plus/Plus Query 171040 TTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTA 171099 |||||| ||| ||||| ||||| ||||| | || || ||| || ||| | | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 171100 TCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAA 171159 || | ||||| || ||||||||||||||||| |||| ||||| ||||| ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 171160 CTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGG 171219 ||| ||| | || ||||| ||||| |||||||| || ||||| || || || ||| ||| Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 171220 TGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATC 171279 |||||| ||| | ||||| ||| || |||||||| ||||| ||||| | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 171280 TTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACA 171339 | | | ||||| || || ||||| || || | || | || || || || || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 171340 AGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCA 171399 ||| ||||| || ||||||||||| |||||||| || || || ||| ||||||||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 171400 GTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGT 171459 ||||| ||||||||||||||||| |||||||||||| | |||| | |||||||| Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 171460 CTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAA 171519 | | ||||| || || | ||||| |||| |||||||||||||| || || ||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 171520 CTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTC 171578 ||||||||||| || || ||| || || || || | || |||| ||| | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCA 539 Query 171579 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 171638 | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||||||||| | Sbjct 540 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 599 Query 171639 TAGACCTAGC 171648 ||||| |||| Sbjct 600 TAGACTTAGC 609 >seq1065 Length=3091 Score = 358 bits (396), Expect = 8e-94 Identities = 702/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| ||||| |||||||| || | ||||||||||| Sbjct 2440 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGC 2381 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || ||||||||||| | || | || |||||||| ||| |||||||| Sbjct 2380 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2321 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || || ||||| || ||||| | || || ||| | || || || || ||| Sbjct 2320 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAATTTCTTA 2261 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || || || || || |||| | || | | | || | | ||| | ||||||||| Sbjct 2260 ACGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGA 2201 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 || || |||||||| ||| || || |||| |||||||||||| || |||| ||||| Sbjct 2200 CCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTC 2141 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| | Sbjct 2140 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 2081 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 |||| | | ||||| || ||| | ||||||| | || || || || Sbjct 2080 TCTGTTCAATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTT 2021 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | | || || || |||||| | || || | |||||||||| ||||| ||||| Sbjct 2020 TCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGC 1961 Query 172275 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 172334 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 1960 GTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 1901 Query 172335 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 172394 || |||||||||||||| || || || || | || | || | ||||| || || ||| Sbjct 1900 CCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 1841 Query 172395 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 172454 || || || || |||| ||| | ||| || || | ||| ||| || | Sbjct 1840 GGGGCTACTGT--AGAAAACACTCTAT---------TC-GAAGATGGTGATGGTGCGAAT 1793 Query 172455 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 172514 || ||| |||| || | || || || | |||||||||||| ||| || Sbjct 1792 ---------ACCTTCCGAGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTT 1742 Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574 ||||||||| | || ||||| || || |||||| | || ||||| || ||| | | ||| Sbjct 1741 ACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTA 1682 Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634 || ||| ||||| | || ||||| |||| ||| | |||| |||| || | || Sbjct 1681 CATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTT 1622 Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 172694 || || || || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 1621 GGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 1562 Query 172695 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 172754 || || || ||||| || |||||||| || || || ||| | || || ||||| | || Sbjct 1561 GATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCG 1502 Query 172755 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 172814 |||||| || || ||||| || ||||| || || | ||||| || || || | ||| Sbjct 1501 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCA 1442 Query 172815 CGAGGCAACGCACTATAA 172832 || || ||||| || ||| Sbjct 1441 CGTGGAAACGCTCTTTAA 1424 >seq21 Length=3603864 Score = 228 bits (252), Expect = 9e-55 Identities = 414/597 (69%), Gaps = 9/597 (2%) Strand=Plus/Plus Query 170711 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGC 170769 ||||||||||| || |||||||| | ||| | ||||| || | || ||| | || Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACTTCCGTATTTATTATCGC 2753503 Query 170770 ATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTT 170829 |||||||| ||||||||||| ||||| || || || | || || ||| |||||||| Sbjct 2753504 CTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTT 2753563 Query 170830 CTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATT 170889 | ||||| ||||| || ||||||||||| | |||| | ||| || || |||| Sbjct 2753564 AATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATT 2753623 Query 170890 ACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCC 170949 || || || || | || ||||| || | | || || ||||| ||||| || ||||| Sbjct 2753624 GCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCC 2753683 Query 170950 TTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTG 171009 || || || || || | |||||| | |||| | || || |||||| | | || Sbjct 2753684 TTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATG 2753743 Query 171010 GGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT 171069 |||||| | | | || ||| | |||||||| ||| || || ||| | ||||| Sbjct 2753744 GGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGT 2753803 Query 171070 ATCTGCAGCATTTGCAG-TA-TTCCTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGA 171126 |||||| | ||| || || |||| | || || ||||| || || ||| | Sbjct 2753804 ---TGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAA 2753860 Query 171127 TGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACA 171186 ||||||| | |||| ||||| ||||| |||||||| ||| | || ||||| ||| | || Sbjct 2753861 TGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCA 2753920 Query 171187 CAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCT 171246 |||||| || | ||| || || || || ||||||||| ||| | ||||| ||| || Sbjct 2753921 CAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGT-TCCT 2753979 Query 171247 CTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGA 171303 |||||||| ||||| |||| | || || ||| | | ||||| ||||| ||||| Sbjct 2753980 ATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 201 bits (222), Expect = 1e-46 Identities = 328/471 (70%), Gaps = 1/471 (0%) Strand=Plus/Minus Query 170759 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 170818 || ||| | || ||||| || || | |||| | ||||| || || || | | || || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 170819 GCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAAC 170878 |||||||| | ||||| ||||| || |||||||||| | ||||| ||| Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 170879 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAC 170938 || || ||||| || || || || || |||||||| || || | || || ||||| ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 170939 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 170998 || || |||||||| || || || || | || ||| ||| | | | || || ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 1370594 Query 170999 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 171058 ||| | |||||||||| | | | || || ||| |||||||| ||| ||||| Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 171059 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 171118 ||||| ||||| | || || ||| || ||| | | || | ||||||| || Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 ||||||||||||||| | |||| ||||| ||||| |||||||| ||| | || ||| | Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGT 171229 | ||| |||||||| || ||||| || || || ||| ||||||||| ||| Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 1370363 >seq9200 Length=658 Score = 143 bits (158), Expect = 3e-29 Identities = 212/298 (71%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| ||| || ||||| | ||| | || ||||||||||| || |||||||| Sbjct 362 TGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC- 420 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | || || || | || ||| | || |||||||| || |||||||| || Sbjct 421 TACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGA 480 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 481 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 540 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 |||||| | |||| |||| || || ||||| || || || || || |||||||| Sbjct 541 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGC 600 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCAC 170971 || || | || || ||||| ||||| || |||||||| || || || || | ||| Sbjct 601 TGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 658 >seq581 Length=5673 Score = 132 bits (146), Expect = 5e-26 Identities = 242/351 (69%), Gaps = 15/351 (4%) Strand=Plus/Plus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 5322 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 5380 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 5381 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGA 5440 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACA-----ACATC 170848 ||| || || || | || || ||| | |||||||| | ||||| |||| | || Sbjct 5441 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATT 5500 Query 170849 ATCTCTGGTGCTGTAGTT----CCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 ||||||||||| | || || |||| || || ||||| ||||| || | Sbjct 5501 ATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC---- 5556 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 ||||||||| || || | || |||||||| ||||| || |||||||| || || || | Sbjct 5557 CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 5616 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACT 171015 | | |||||| | |||| | || || |||||| | |||||||||| Sbjct 5617 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 >seq1856 Length=2117 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| || || |||||||| || || |||||||| || Sbjct 1189 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 1130 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGT----AGGAACTAC 171910 || || || || ||||||||||| | || | || |||||||| || ||| ||||| Sbjct 1129 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 1070 Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTG 171942 ||| || || || ||||| || ||||| |||| Sbjct 1069 TTTTGTAACTTCTTGGTATACCCATGG-ATTG 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570184785149040