Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 1e-13 seq65 91.5 4e-13 seq19 91.5 4e-13 seq141 86.0 2e-11 >seq4 Length=6248241 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | |||||| | || | Sbjct 1174703 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTCTGAAGGAATGTGCTGTCATAAGC 1174762 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | |||||| |||| || || | ||||| || Sbjct 1174763 AAATCTGCTGGAGGAATTGGTGTTTCAGTTCACAATATTCGAGCTACTG-GTAGTTATAT 1174821 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || |||||| | ||||| ||| | ||||| || | |||| Sbjct 1174822 TCGGGGAACAAATGGAACTTCCAATGGGATTGTTCCTATGTTACGTGTTTTCAATGATAC 1174881 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | ||||| || || ||||| || || | |||||| Sbjct 1174882 TGCTCGTTACGTTGATCAAGGTGGCGGCAAAAG-AAAGGG 1174920 >seq65 Length=1719075 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 371111 AATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGTGACCGTCCTTC 371170 ||| || ||||| ||||||| ||||| | |||||||||||||| ||||| || ||||| Sbjct 671851 AATCATACAATCCCTCTCCATTTCACCGAAACGGAGACCACCATCACGTGAACGCCCTTC 671910 Query 371171 TGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGTGACTTGTCAAC 371230 || ||| || || |||| ||| | ||| || | || |||| ||| ||| | Sbjct 671911 TGCTGGTTGTCGGGTGAGTATCTGGACAGGACCACGACCTCTTGAATGTATCTTATCATC 671970 Query 371231 TACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATAG 371280 |||||||||||||| | || ||||| ||| | | |||||||||| Sbjct 671971 CACCATGTGCTTGAGTCTTTGGTAATATGTGGGACCCAAGAAAATCATAG 672020 >seq19 Length=3678990 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 371111 AATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGTGACCGTCCTTC 371170 ||| ||| ||||| ||||||| || |||| ||||| |||||||| | ||| ||||| || Sbjct 2970669 AATCATGCAATCCCTCTCCATTTCTCCAAAACGGAGGCCACCATCACCTGAACGTCCCTC 2970610 Query 371171 TGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGTGACTTGTCAAC 371230 || ||| ||||| |||| ||| | ||| || | || |||| ||| ||| | Sbjct 2970609 TGCTGGTTGACGTGTGAGTATCTGAACAGGACCACGACCTCTTGAATGTATCTTATCATC 2970550 Query 371231 TACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATAG 371280 |||||||||||||| | || || || ||| ||| |||||||||| Sbjct 2970549 CACCATGTGCTTGAGTCTTTGGTAGTACGTGGGACCAAGGAAAATCATAG 2970500 >seq141 Length=547207 Score = 86.0 bits (94), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||||||||| | ||||| | | || |||||||||||||| || ||||||||||| Sbjct 374135 CAGTTTTATGTTGAGAACGGGGAGTTATCCTGCCAAATGTATCAACGTTCTGCTGATATG 374076 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCA 111788 |||||||| ||||| || || |||||| Sbjct 374075 GGTCTTGGAGTTCCATTCAACATTGCA 374049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303156783016652