Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq98 104 2e-17 seq22 87.8 1e-12 >seq98 Length=1153593 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| || ||| ||||| |||| || |||||| | Sbjct 1043384 AAGCCCGTTCCCTTGGCTGTGGTTTTCCTGGATTGTAGAAAGGGACAGTGGGAATCTCAT 1043443 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||| |||||||||||||||||| ||||||||| Sbjct 1043444 TATTCCATTCATGCGCGTCACTAATGAGATGACGA 1043478 >seq22 Length=3457718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/228 (68%), Gaps = 11/228 (5%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | |||| || | |||||||| |||||| || ||||||||||||| | Sbjct 1877426 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCC 1877367 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || || | ||| || || ||||| || || || || || || ||| Sbjct 1877366 A-----------TCCTCAAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTAGTGGG 1877318 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || ||| ||||||||| | || || ||| || ||||| Sbjct 1877317 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAACC 1877258 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | |||||||| || || || | || ||||| || ||||||||| Sbjct 1877257 TCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCATG 1877210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334899087556166