Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 100 4e-16 seq49 96.9 4e-15 seq93 87.8 2e-12 >seq4 Length=6248241 Score = 100 bits (110), Expect = 4e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | ||| | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 1174905 CCACCTTGATCAACGTAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 1174846 Query 63287 TTGGATGTACCATTGGT-CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||| || ||||| || ||| || ||||| || ||| | || |||||||| || ||| Sbjct 1174845 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAACTGA 1174787 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 1174786 AACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGAT 1174727 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || || ||||| ||||| || || |||||||| Sbjct 1174726 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 1174685 Score = 89.7 bits (98), Expect = 7e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| || | || || ||||| || |||||||| | ||| | |||| Sbjct 1174583 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 1174524 Query 63526 GTACGTCTCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATT 63583 ||| || | || || || || || || |||| ||| || || |||| || | |||| Sbjct 1174523 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 1174466 Query 63584 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63643 ||||||||||| ||||||||||| | ||| | || || | ||| || | || Sbjct 1174465 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 1174406 Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 | |||||| || ||||| |||| || |||||| | ||||||||||| Sbjct 1174405 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 1174356 >seq49 Length=2122476 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 612190 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 612249 Query 63287 TTGGATGTACCATTGGT-CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||| || ||||| || ||| || ||||| || ||| | || |||||||| || ||| Sbjct 612250 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAACTGA 612308 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 612309 AACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGAT 612368 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || || ||||| ||||| || || |||||||| Sbjct 612369 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 612410 >seq93 Length=1192474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || |||||||| ||||||||||| | || | |||||||| || ||||| Sbjct 325213 CACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 325272 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| ||||| || || || ||||| || |||| |||| || ||||| |||||||| Sbjct 325273 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAA 325331 Query 32780 AATTCCTTCTAC 32791 || || || || Sbjct 325332 GATGCCCTCGAC 325343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633538650165600