Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1065 526 2e-144 seq7681 473 1e-128 seq21 242 4e-59 seq46 221 1e-52 seq9200 138 1e-27 seq581 125 8e-24 >seq1065 Length=3091 Score = 526 bits (582), Expect = 2e-144 Identities = 728/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | |||| |||||| | | | ||||| || || ||||| || |||||||| Sbjct 2440 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGC 2381 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 2380 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2321 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC-TTGAGGGTGCT--AATTTT 167476 || || ||||||||||| || ||||| ||||| | || || ||| ||||| Sbjct 2320 GTAACTTCTTGGTATACCCATGGATTGGC---TAGTTCCTATTTAGAAGGCTGCAATTTC 2264 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 167536 | ||||| || || || || |||||| | | | | || ||| | | ||||| ||| Sbjct 2263 TTAACGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGG 2204 Query 167537 GGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTT 167596 || || || | || |||||||| | | ||||| || | || || || ||| ||||| Sbjct 2203 GGACCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 2144 Query 167597 GTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGT 167656 || || ||||| || || ||||| || ||||| || ||| | || |||||||| | | Sbjct 2143 GTCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCT 2084 Query 167657 AGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTT 167716 | || | | ||||| ||||| ||| | || |||||||| || || || ||| Sbjct 2083 CGGTCTGTTCAATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTT 2024 Query 167717 GTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTT 167776 || || || || || || ||||| || || || || ||||||||||||||||| ||| Sbjct 2023 GTTTCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTT 1964 Query 167777 GGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTC 167836 || || ||||| |||||| ||||| | || ||| | || || || ||||| |||||| | Sbjct 1963 GGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTG 1904 Query 167837 AACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATC 167896 ||||| || ||||||||||||||||| || | |||||| || |||| | || || Sbjct 1903 AACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATT 1844 Query 167897 CATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAA 167956 ||||| | ||| ||||| || ||||| | ||||||||||| || || || ||| | Sbjct 1843 CATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGA 1784 Query 167957 GCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGG 168016 || ||| | | ||||| | || ||||||||||| ||||| ||||||||||| || ||| Sbjct 1783 GCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGG 1724 Query 168017 TCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTC 168076 || ||||| |||||| ||||||| |||||| |||||||| || ||||||||||| || Sbjct 1723 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 1664 Query 168077 GTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTT 168136 || || |||| || | |||| ||| ||||||| | | || || || || || || Sbjct 1663 GTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTA 1604 Query 168137 CGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACT 168196 ||||| |||||||| || || |||||| | | ||||| || ||||| || ||||| ||| Sbjct 1603 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 1544 Query 168197 TTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGAC 168256 ||||| || ||||| ||||| | || || || | ||||| |||||||| | || Sbjct 1543 TTCTACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGAT 1484 Query 168257 CAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || |||||||| || ||||||| || || || | ||| | || |||||||| Sbjct 1483 CAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 1428 >seq7681 Length=829 Score = 473 bits (524), Expect = 1e-128 Identities = 475/614 (77%), Gaps = 2/614 (0%) Strand=Plus/Plus Query 166428 TTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTA 166487 ||||||| || ||||| || || ||||||||||| || | || || ||| || | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 166488 TCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAA 166547 ||| | |||||||| ||||||||| | ||||| | || ||| ||| || ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 166548 CTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGG 166607 || ||| |||| ||||| ||||||||||||||||| ||||| || || || ||| | || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 166608 TGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTC 166667 |||||| ||||||||||| || || || ||| || ||||| || | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 166668 CTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTC 166726 | | | | || | || |||||||||| ||| ||| || | |||||||| ||||||| Sbjct 241 -TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTC 299 Query 166727 AAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCC 166786 |||| |||||||| || ||||| ||||||||||| ||||| || ||||| | ||||||| Sbjct 300 AAGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCC 359 Query 166787 AATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTG 166846 |||| ||| |||||||||||||| || | ||||||||| | || || |||||||| | Sbjct 360 AATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAG 419 Query 166847 TCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCA 166906 | || |||||||| |||||| | ||| |||| || |||||||||||||| || ||||||| Sbjct 420 TAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCA 479 Query 166907 ACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCC 166966 | |||||||| || | | ||| | || ||||| || | || |||||||| ||| || Sbjct 480 ATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCA 539 Query 166967 TCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTC 167026 ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 540 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 599 Query 167027 TGGATCTTGCTGCT 167040 | || | |||||| Sbjct 600 TAGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 242 bits (268), Expect = 4e-59 Identities = 436/629 (69%), Gaps = 6/629 (1%) Strand=Plus/Plus Query 166075 ACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCA 166134 ||||| || ||||||| | | |||||||| ||||||| || || | ||| | Sbjct 2753422 ACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 2753480 Query 166135 GCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGAT 166193 ||||| || || || || |||| ||| | || || ||||| || ||||| ||||| || Sbjct 2753481 GCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTAT 2753539 Query 166194 CCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 166253 |||||||| || || ||| |||| ||||| ||||| || ||||||||||| || | Sbjct 2753540 TCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTAT 2753599 Query 166254 CCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGA 166313 || | || || || | | || || || || | || ||||| |||| |||| Sbjct 2753600 TCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGA 2753659 Query 166314 TGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCAT 166373 ||||||| | || || |||||||||| |||| | || | |||||| | | || | Sbjct 2753660 TGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGT 2753719 Query 166374 CTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 166433 | || |||||||||||||||||| | || | | ||||||||||||||||| Sbjct 2753720 AGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGAT 2753779 Query 166434 TTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTT 166493 | || || || || | ||||||||||| || | || | ||| || |||| ||| Sbjct 2753780 TGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTAC 2753839 Query 166494 CGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACAT 166553 |||||||| ||| ||| | | ||| | | || ||| ||| || ||||||| || Sbjct 2753840 TGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTAT 2753899 Query 166554 GCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGC 166613 | |||| ||||| ||| ||||||||||||| | ||| || || || || | |||||||| Sbjct 2753900 GGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGC 2753959 Query 166614 AGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCT 166673 ||||||||||| || || || ||| || ||||| | | || || | || | | Sbjct 2753960 TGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCT-CTAGTT 2754017 Query 166674 CG-TCCGTGAGACCACTGAAACTGAGTCT 166701 | || | ||||||||||||||||| ||| Sbjct 2754018 TGATCAGGGAGACCACTGAAACTGAATCT 2754046 >seq46 Length=2187656 Score = 221 bits (244), Expect = 1e-52 Identities = 348/493 (71%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 166129 TTGGCAGCAACCATCTGTTTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGAT 166188 ||| | ||||| || ||| || |||| ||| | || || | ||| | ||||| ||| Sbjct 1370849 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 1370791 Query 166189 GGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCT 166248 || || || |||| | || ||| || | ||||| ||||| || |||||||||| Sbjct 1370790 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 1370731 Query 166249 GTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCA 166308 || | || | | || || || | || || || || || |||||||| ||||| Sbjct 1370730 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 1370671 Query 166309 CTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATC 166368 |||||||||||| | || || |||||||||| |||| | || | || ||| | | Sbjct 1370670 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 1370611 Query 166369 G-GCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCC 166427 | | | || || || ||||||||||| |||||| | || | | || ||||||| ||| Sbjct 1370610 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCC 1370553 Query 166428 TTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTA 166487 ||||||| || ||||| || || ||||||||||| || | || || ||| || | || Sbjct 1370552 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 1370493 Query 166488 TCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAA 166547 || |||||||||| ||||||||| | ||| | | || ||| ||| || ||||| Sbjct 1370492 CGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAA 1370433 Query 166548 CTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGG 166607 || ||| |||| ||| | | ||||||||||||||| ||||| || || || ||| | || Sbjct 1370432 CTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 1370373 Query 166608 TGTAGCAGGTGTA 166620 |||||| |||||| Sbjct 1370372 TGTAGCTGGTGTA 1370360 >seq9200 Length=658 Score = 138 bits (152), Expect = 1e-27 Identities = 205/288 (71%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || ||| | || |||||||| | || |||||||| | Sbjct 352 CTTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTT 411 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | ||||| || || || || |||| ||| | || || | Sbjct 412 GATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCC 470 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || |||||||| || | || ||| || | ||||| |||| Sbjct 471 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 530 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 | || ||||||||||| || | || | || || || || | || || || || | Sbjct 531 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAA 590 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTT 166339 | |||||||| ||||| ||||||||||| | || || |||||||||| Sbjct 591 TTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 125 bits (138), Expect = 8e-24 Identities = 245/359 (68%), Gaps = 15/359 (4%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || ||| | ||||||||||| | || ||||| || | Sbjct 5312 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 5371 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | |||| | ||||| || || |||||||| | || || | Sbjct 5372 GATGATCCCTACCTTATTGACCGCAA-CTTCTGTATTTATTATCGCTTTCATCGCTGCCC 5430 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || |||||||| || | || ||| || | ||||| |||| Sbjct 5431 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 5490 Query 166232 -----ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAAC----GCAATTGGTCTTCACT 166282 | || ||||||||||| || | || ||| | | || || || | |||| Sbjct 5491 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 5550 Query 166283 TCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCC 166342 | || | ||||||||| ||||| ||||||| ||| | || || || ||||||| Sbjct 5551 TTTACC----CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 5606 Query 166343 AGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAA 166401 |||| | || | |||||| | | || | | || ||||||||||| |||||| Sbjct 5607 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 5665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567148432545600