Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq26 91.5 2e-13 seq8 91.5 2e-13 seq3 91.5 2e-13 seq108 89.7 6e-13 seq66 87.8 2e-12 seq13 86.0 7e-12 seq9 86.0 7e-12 seq12 84.2 2e-11 seq34 82.4 8e-11 >seq26 Length=2863263 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 862477 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 862418 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| || ||||| ||||||||| Sbjct 862417 TGGGTTCAAATCCCACTTCTGACAAAT 862391 >seq8 Length=5380884 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 2475522 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 2475581 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||||| || || || Sbjct 2475582 GCGTGGGTTCAAATCCCACTTCTGACAATTTGTTTTT 2475618 >seq3 Length=6757429 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/98 (82%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 5339621 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 5339562 Query 126323 GTGGGTTCGAACCCCACACCTGA---CAAATTATTATT 126357 |||||||| || ||||| |||| |||||| ||||| Sbjct 5339561 GTGGGTTCAAATCCCACTTCTGACATCAAATTTTTATT 5339524 >seq108 Length=920742 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 268186 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 268127 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 268126 TGGGTTCAAATCCCACTTCTGACAAA 268101 >seq66 Length=1692811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 301494 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 301553 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 301554 GTGGGTTCAAATCCCACTTCTGACA 301578 >seq13 Length=4842706 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 3881940 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 3881999 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 3882000 TGGGTTCAAATCCCACTTCTGACA 3882023 >seq9 Length=5113091 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 201986 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 201929 Query 126328 TTCGAACCCCACACCTGACA-AATTATTATT 126357 ||| || |||||| ||| || |||| ||||| Sbjct 201928 TTCAAATCCCACAGCTGTCATAATTTTTATT 201898 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2478668 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2478725 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || | |||| Sbjct 2478726 TTCAAATCCCACAGCTGTCATAATATT 2478752 >seq12 Length=4890841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2163416 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2163473 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 2163474 GGGTTCAAATCCCACAGCTGTCAATTTTTT 2163503 >seq34 Length=2694495 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 157326 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 157269 Query 126328 TTCGAACCCCACACCTGAC---AAATTATTATTGGAATTTTTG 126367 ||| || |||||| ||| | || || ||||| ||||||| Sbjct 157268 TTCAAATCCCACAGCTGTCACTAATTTTTTATTTTCATTTTTG 157226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556778760482640