Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq131 120 6e-22 seq93 109 1e-18 seq468 93.3 9e-14 seq214 93.3 9e-14 seq108 93.3 9e-14 seq91 93.3 9e-14 seq39 93.3 9e-14 seq38 93.3 9e-14 seq29 93.3 9e-14 seq18 93.3 9e-14 seq12 93.3 9e-14 seq11 93.3 9e-14 seq27 91.5 3e-13 seq103 87.8 4e-12 >seq131 Length=616296 Score = 120 bits (132), Expect = 6e-22 Identities = 552/858 (64%), Gaps = 32/858 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| ||| ||||| |||||||| ||||||| ||||| | | Sbjct 272458 TCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTTGGCG 272517 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| || || | || | | | |||||| || || ||||| | Sbjct 272518 ACGTTGTACATCTTCTTGTGCCCCAAAGCCATTAGCAGGCGGTCGGCGACGAACTCGACG 272577 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | ||||||||| | | | || || |||| || || |||| Sbjct 272578 TACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGCG-CAGGGAAGCGCGTCGCAGAC 272636 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || ||| || | || || || | || || | || | | | ||| Sbjct 272637 GAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCGGGACTCGTCCAG 272696 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCGTC 251858 |||| || ||| || || | ||| || || | |||||| |||||||| Sbjct 272697 CTTGACGCGGAGGAGGTCGTAGAGAAGGCACGCGAA---GTCGCAGTGCAGGCCCTCGTC 272753 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | ||||| ||||| | ||| || ||| ||||||| Sbjct 272754 GCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGTTTCTTGAGCCA 272813 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| ||||| || || || ||||| | | |||||||| || | | || ||||| Sbjct 272814 GAAGATGGCGCAGAACGAGCCCGAGAAGAAAATGCCCTCGACGCAGGCGAACGCGACAAG 272873 Query 251979 GCGCTCAGCAAACGACTTG--TCCTGCGA-CAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 ||||| || || || | || ||| | || | | | ||| | ||||| Sbjct 272874 ACGCTCGGCGAAGCGCTCGCCGCCCTCGATCCAGCGCAT---GGTCCACTCGGCCTTGCG 272930 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | || ||||||| || || || || ||||| || | ||| || |||| Sbjct 272931 GCGCACGGCGGGGACCGTCTCTATGGCGCGGAAGAGCCGGTCCTTCTCCGCGCCGTCGCG 272990 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| | || ||||| || |||||||||||||| |||||| || || ||||| Sbjct 272991 GATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCAATGGCGATCTG 273050 Query 252156 GTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTT--CCGT-GGA---AAAGTTGTT 252209 | | | |||| ||||||| | |||| ||| | ||| ||| || Sbjct 273051 GAAGCCGTAGA----ACGCGCG--CGCCTCGGCGACCTGGACGTCGGACATGAACCGCGA 273104 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGAT 252269 || | |||||| | ||| ||||| ||| | || |||||| | || | | ||| Sbjct 273105 CGCCAGGTTCTCGAGCACGATGCCGTCGGACGCGGCGAAGAAGGCGAGCACGTGGGAGAT 273164 Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGT-CGGCAATGTCCTGATTCAGAG 252328 |||||| ||||| || |||||||| | | ||||| | || | ||| | |||| Sbjct 273165 GAAGTGGCGCTCGTCCGCGTTGAGCGCGGCGTCCCAGTGCCGC-ACGTC--GGCGGAGAG 273221 Query 252329 G--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATC 252386 | || || || | |||||||| | || ||||||||||||||| | | | | | Sbjct 273222 GTCCACCTCCTCGGCTGTCCAGAACGAGGCCACCGCCTTCTTGTAGAACTCCCAGATCTG 273281 Query 252387 AGGGTACTTGATTGGGAA 252404 ||||||||||| ||||| Sbjct 273282 CGGGTACTTGATCGGGAA 273299 >seq93 Length=1192474 Score = 109 bits (120), Expect = 1e-18 Identities = 390/603 (65%), Gaps = 9/603 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| |||||||| ||||||| ||||| | | Sbjct 324946 TCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCATCCAGTCGAACGGGTTGGCG 325005 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| ||||| || || | || | |||||| || || ||||| | Sbjct 325006 ACGTTGTACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTCGATG 325065 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || | ||||||||| | | || || | || || |||| | Sbjct 325066 TACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCAGGGGAGCGCGTCGCAGACG 325125 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || || | | || || || | || || | || | | | ||| Sbjct 325126 AACTCGCGCTCTATATCGACGGCGTCGGCGACTATCTCGCGGACGCGCGACTCGTCGAGC 325185 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 ||| || || ||||| | ||| ||| | |||||||||||||||||| Sbjct 325186 TTGACGCGGAGAAGATCATAGAGGAGGCACGC-AAAGTCGCAGTGCAGACCCTCGTCGCG 325244 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | | ||||| ||||| | || || ||| |||||||||| Sbjct 325245 GGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAA 325304 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| ||||| || ||||| || || | | |||||||| || | | || || || || Sbjct 325305 GATGGCGCAGAAAGATCCCGAAAAGAAGATGCCCTCGACGCAGGCGAACGCGACGAGCCG 325364 Query 251982 CTCAGCAAACGACTTG--TCCTGCGA-CAAGAACTTCTGTGCCCATGCTGCCTTCTTTCC 252038 ||| || || || | || ||| | || | | ||||| | ||||| | Sbjct 325365 CTCGGCGAAGCGCTCGCCGCCCTCGATCCAGCGCAT---GGCCCACTCGGCCTTGCGGCG 325421 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 || ||||||| || || || || || || || | |||||| |||| ||| Sbjct 325422 CACGGCGGGGACGGTCTCTATGGCGCGGAACAGGCGGTCCTTCTCGGCGCCGTCGCGGAT 325481 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | | || ||||| || |||||||||||||| |||||| ||| || |||||| | Sbjct 325482 GTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGG-A 325540 Query 252159 AGC 252161 ||| Sbjct 325541 AGC 325543 >seq468 Length=8586 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 7714 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7773 Query 142563 CCCCAC 142568 |||||| Sbjct 7774 CCCCAC 7779 >seq214 Length=123435 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 104961 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 105020 Query 142563 CCCCAC 142568 |||||| Sbjct 105021 CCCCAC 105026 >seq108 Length=920742 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 652917 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 652858 Query 142563 CCCCAC 142568 |||||| Sbjct 652857 CCCCAC 652852 >seq91 Length=1208344 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 142899 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 142958 Query 142563 CCCCAC 142568 |||||| Sbjct 142959 CCCCAC 142964 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 457644 ATGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 457703 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 457704 AGCCCCAC 457711 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||| |||||||||||| || ||||||| || ||||||||||| ||||| Sbjct 146421 AGCCCGTCTAGCTCAATCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGCTCGAG 146362 Query 142563 CCCCAC 142568 |||||| Sbjct 146361 CCCCAC 146356 >seq39 Length=2543792 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2108075 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2108016 Query 142563 CCCCAC 142568 |||||| Sbjct 2108015 CCCCAC 2108010 >seq38 Length=2547764 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1938442 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1938501 Query 142563 CCCCAC 142568 |||||| Sbjct 1938502 CCCCAC 1938507 >seq29 Length=2799229 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| |||||||||||||||||||| || ||||||| || |||||||||||||| Sbjct 2094753 GAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 2094812 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 2094813 GAGCCCCAC 2094821 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 2483881 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2483940 Query 142564 CCCAC 142568 ||||| Sbjct 2483941 CCCAC 2483945 >seq18 Length=3692672 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2925000 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2925059 Query 142563 CCCCAC 142568 |||||| Sbjct 2925060 CCCCAC 2925065 >seq12 Length=4890841 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| |||||||||||||||||||| || ||||||| || |||||||||||||| Sbjct 1447114 GAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 1447173 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 1447174 GAGCCCCAC 1447182 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 1275894 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 1275953 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 1275954 AGCCCCAC 1275961 >seq11 Length=4958479 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1033073 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1033132 Query 142563 CCCCAC 142568 |||||| Sbjct 1033133 CCCCAC 1033138 >seq27 Length=2856388 Score = 91.5 bits (100), Expect = 3e-13 Identities = 63/70 (90%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||| ||||| |||||||||||||||||||| || ||||||| || ||||||||||||| Sbjct 1383655 AGAT-GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 1383713 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 1383714 CGAGCCCCAC 1383723 >seq103 Length=1010859 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 250952 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 251011 Query 142563 CCCCAC 142568 |||||| Sbjct 251012 CCCCAC 251017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027681588292026