Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq8 113 4e-20 seq68 104 2e-17 seq22 95.1 1e-14 seq45 89.7 4e-13 seq37 87.8 2e-12 >seq8 Length=5380884 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || ||| ||| ||||| || || ||| Sbjct 978508 GTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCCTCAAGCTGCTTGCCA 978567 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 978568 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 978627 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || |||| ||| | || |||||||| || || Sbjct 978628 ACGTTGTCAATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTGCCGGTAAGGGTC 978687 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 978688 TTCACAAAGATCTGCAT 978704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| || Sbjct 978703 ATACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 978762 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || || || || ||||| |||| |||||||| |||||||| Sbjct 978763 GCGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGC 978822 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || | | |||| ||||| | || || Sbjct 978823 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCAGATGACTCA 978882 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || |||||||| || || || ||||||||||||||| Sbjct 978883 ACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCATG 978933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || ||||| || || |||||| ||||||||||||| |||||||| || ||||| || ||| Sbjct 979462 TCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 979521 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | |||| |||||| | ||| || || || | ||| | Sbjct 979522 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATG 979581 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || || || || || || |||||||| Sbjct 979582 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 979616 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || ||| ||||| || || ||| Sbjct 979192 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 979251 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || |||||||| || ||||| || || || Sbjct 979252 GCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTC 979311 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || ||||| || | || | || || || || || || Sbjct 979312 ACATTGTCGATGGTGTCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCCGTGAGGGTC 979371 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 979372 TTCACGAAGATCTGCATGCCT 979392 >seq68 Length=1664768 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || ||||||||||| || || || || ||| || || || |||||| Sbjct 547879 GTAGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTACCA 547820 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 547819 GCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 547760 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || ||||| || || || Sbjct 547759 ACGTTATCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTTGCCAGTAAGCGTC 547700 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 547699 TTCACAAAGATCTGCAT 547683 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| || Sbjct 547684 ATACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 547625 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || || |||||| ||||||||||||| ||||| ||| Sbjct 547624 GCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGA 547565 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | || | |||||| | ||| || Sbjct 547564 GGAATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCCGAGGACTCC 547505 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| || || || || ||||| ||||||||| Sbjct 547504 ACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 547454 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || ||||| || ||||| ||||||||||||| || ||||| || ||||| || ||| Sbjct 547153 TCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTG 547094 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | |||| |||||| | ||| || || || | ||| | Sbjct 547093 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATG 547034 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||| || || || || || |||||||| Sbjct 547033 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 546999 >seq22 Length=3457718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || ||||| ||| ||||| || || || Sbjct 1877624 GTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGCCCATCCTCAAGCTGCTTCCCG 1877565 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||| ||||| ||||| ||||| || Sbjct 1877564 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTC 1877505 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || || | || | ||| ||||| |||||||| Sbjct 1877504 ACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGCGTGATCGTCTTGCCAGTCAGAGTC 1877445 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1877444 TTGACAAAGATCTGCAT 1877428 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || ||||||| || || || || ||| ||||| || || ||| Sbjct 1876974 GTAGACTCCTTCTGGATGTTGTCGTCCGCCAGTGTGCGGCCATCCTCAAGCTGCTTCCCA 1876915 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||| || ||||| |||||| || Sbjct 1876914 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 1876855 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | ||| || |||| || | || ||||| || || || Sbjct 1876854 ACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAACGTGATTGTCTTGCCAGTAAGGGTC 1876795 Query 114366 TTTACAAAAATCTGCAT 114382 ||||||||||| ||||| Sbjct 1876794 TTTACAAAAATTTGCAT 1876778 >seq45 Length=2202424 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||||| || || || || || ||| Sbjct 1622753 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCCA 1622694 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 1622693 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1622634 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||||| || || | ||| | || || ||||| || || Sbjct 1622633 ACGTTGTCGATTGTGTCAGATGATTCCACCTCAAGGGTGATGGTCTTACCGGTGAGGGTC 1622574 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1622573 TTGACAAAGATCTGCAT 1622557 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||| | || || || || ||||||||||| || Sbjct 1623468 ACCACCACGGAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGC 1623409 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || ||| || || || || || || ||||||||||||| |||||||| || Sbjct 1623408 GAGAGTGCGGCCATCCTCCAGCTGCTTCCCTGCAAAGATGAGACGCTGCTGGTCCGGGGG 1623349 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| ||||| ||||| || | | |||| ||||||| | || || Sbjct 1623348 GATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATAGTGTCGGAGCTCTCAAC 1623289 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| || | || ||||| |||| || || ||||| ||||||||| Sbjct 1623288 CTCCAGTGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1623240 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || ||||||||||| | || || ||| ||||| || || || Sbjct 1623209 GTAGACTCCTTCTGTATGTTGTAATCAGCGAGTGTGCGCCCATCCTCAAGCTGCTTGCCG 1623150 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||||||||| ||||| || ||||| ||||| || Sbjct 1623149 GCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 1623090 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || |||||||| || || Sbjct 1623089 ACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 1623030 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1623029 TTGACGAAGATCTGCAT 1623013 >seq37 Length=2664577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || || || || || || || Sbjct 1936689 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGCCCGTCCTCGAGCTGCTTGCCG 1936630 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 1936629 GCGAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1936570 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | || || || |||| ||| | || |||||||| || || Sbjct 1936569 ACGTTGTCAATGGTATCAGAAGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 1936510 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 1936509 TTCACGAAGATCTGCATGCCT 1936489 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || || ||| || || || || ||| Sbjct 1936461 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCCATCCTCGAGCTGCTTGCCA 1936402 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 1936401 GCGAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1936342 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| || || || | ||| | || ||||| || || || Sbjct 1936341 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 1936282 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1936281 TTCACGAAGATCTGCAT 1936265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420074051107032