Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq131 316 4e-81 seq93 313 5e-80 >seq131 Length=616296 Score = 316 bits (350), Expect = 4e-81 Identities = 629/916 (69%), Gaps = 23/916 (3%) Strand=Plus/Minus Query 42240 GAGCCGCTCCTGGCGCCGAGCAACTCCAGGTTCACCCTGGACGTGATCGAGCACCAGGAC 42299 ||||||||||||||| | | | | | ||| || || | |||| || ||| | | Sbjct 273338 GAGCCGCTCCTGGCGGAGTCCTCCGACCGCTTCTCCATGTTCCCGATCAAGTACCCGCAG 273279 Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| | |||||||||||| | ||| |||||| ||||||||| | ||||| Sbjct 273278 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCGTTCTGGACAGCCGAGGAGGTGGACCTC 273219 Query 42360 GCCAAGGACACGGCCGGC--TGGGA-GTCACTGTCT--GAGAACGAAAAGTTTTTCCTCA 42414 || ||| | |||| ||||| | | | || | | |||| ||| || Sbjct 273218 TCCGCCGACGTG--CGGCACTGGGACGCCGCGCTCAACGCGGACGAGCGCCACTTCATCT 273161 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 || | || |||||||||||||| || |||||||| || ||||||||||| | Sbjct 273160 CCCACGTGCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTGCTCGAGAACCTGGCGTCGC 273101 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||||||| || || ||| | ||||||||| ||||||||||||||||| |||| Sbjct 273100 GGTTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCGTTCTACGGCTTCCAGATCGCCA 273041 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | |||||| | ||||| ||| ||||| | ||||| | || ||||||| || || Sbjct 273040 TTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCG 272981 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 ||| || |||| ||| ||||| |||||| | ||| | | ||||| | Sbjct 272980 CGGAGAAGGACCGGCTCTTCCGCGCCATAGAGACGGTCCCCGCCGTGCGCCGCAAGGCCG 272921 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCC 42713 | ||| | | |||||||||| | ||| ||| |||| |||| | || || || Sbjct 272920 AGTGGACCATGCGCTGGATCGAGGGCGGCGAGCGC----TTCGCCGAGCGTCTTGTCGCG 272865 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 || || |||||||||||| |||||||||||| | ||| | ||||||||||||||||| Sbjct 272864 TTCGCCTGCGTCGAGGGCATTTTCTTCTCGGGCTCGTTCTGCGCCATCTTCTGGCTCAAG 272805 Query 42774 CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 | | | ||||| || ||||||||||| ||||| |||||| | | |||||||| Sbjct 272804 AAACGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 272745 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA-- 42891 ||||| | ||||| || ||||| || | ||| || |||| | |||| || || Sbjct 272744 CTGCACTGCGACTTCGCGTGCCTTCTCT--ACGA-CCTCCTCCGCGTCAAG--CTGGACG 272690 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 || || ||||| | ||| || | || ||||| || |||||| |||||| || Sbjct 272689 AGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCG 272630 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 | |||| ||| | || |||||||||||| || || ||| || ||||| || ||| Sbjct 272629 ACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGCGTGCTTATGAGCCAGTACGTCGAGT 272570 Query 43012 ACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTG 43069 ||||||||||| || || || | |||| | || | |||||| |||| Sbjct 272569 TCGTCGCCGACCGCCTGCTAATGGC-TTTGGGGCACAAGAAGATGTACAACGTCGCC-AA 272512 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| ||||||| |||||| |||||| || |||| ||||||||||| ||||||||||| Sbjct 272511 CCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGTAAGACCAACTTCTTCGAGAAGCG 272452 Query 43130 CGTCGCCGACTACCAG 43145 ||||| ||| |||||| Sbjct 272451 CGTCGGCGAGTACCAG 272436 >seq93 Length=1192474 Score = 313 bits (346), Expect = 5e-80 Identities = 514/729 (71%), Gaps = 18/729 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| ||||||||||| |||||||||||| | |||||||| Sbjct 325640 CTCGCCTTCTTCGCCGCCTCCGACGGCATAGTGCTTGAGAACCTGGCGTCGCGGTTCATG 325581 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| ||||||||| ||| |||||||||||||| ||||| |||||| Sbjct 325580 TCCGACGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAAC 325521 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | ||||| | || ||||||| || || |||| Sbjct 325520 ATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAG 325461 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | |||||| ||||| ||||| | ||| | | ||||| || ||||| Sbjct 325460 GACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCC 325401 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | |||||||||| | ||| ||| |||| |||| |||| || || || || Sbjct 325400 ATGCGCTGGATCGAGGGCGGCGAGCGC----TTCGCCGAGCGGCTCGTCGCGTTCGCCTG 325345 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 |||||||||||||||||| ||||| | ||| | ||||||||||||||||| | | | Sbjct 325344 CGTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAG-AAACGCG 325286 Query 42782 GTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | | ||||| || ||||| ||||| ||||| |||||| | | |||||||| ||||| Sbjct 325285 GCCTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACT 325226 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | |||||||| ||||||| ||| | ||| | |||| ||||| || ||| Sbjct 325225 GCGACTTTGCGTGCCTCC---TCTATGATCTTCTCCGCGTCAAG--CTCGACGAGTCGCG 325171 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | || || | || ||||| || || ||| |||||| || | |||| Sbjct 325170 CGTCCGCGAGATAGTCGCCGACGCCGTCGATATAGAGCGCGAGTTCGTCTGCGACGCGCT 325111 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||| | || |||||||||||| || |||||| | |||||||| ||| |||||| Sbjct 325110 CCCCTGCGCGCTAGTCGGCATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGC 325051 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTC 43076 ||||| || || || | | |||| | || | |||||| |||| ||| ||| Sbjct 325050 CGACCGCCTGCTCATGGC-GCTGGGCCACAAGAAGATGTACAACGTCGCC-AACCCGTTC 324993 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| ||||| | |||||||||||||||| |||||||||||||||| | Sbjct 324992 GACTGGATGGAGCTTATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 324933 Query 43137 GACTACCAG 43145 || || ||| Sbjct 324932 GAGTATCAG 324924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944200075227360