Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq68 95.1 1e-14 seq18 95.1 1e-14 seq37 93.3 3e-14 seq69 86.0 5e-12 seq5 86.0 5e-12 seq22 84.2 2e-11 seq16 84.2 2e-11 seq45 82.4 6e-11 >seq68 Length=1664768 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||||||||| || || || ||||||||| |||||||| || || Sbjct 547225 CCACCCCTGAGCCTCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC- 547167 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| ||||||||| ||||| || || |||||||||||| || Sbjct 547166 AAGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGG 547107 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 547106 GATGCCCTCCTTGTCC 547091 >seq18 Length=3692672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| ||||||||| ||||||||| |||||||| || |||| || Sbjct 917442 AGGCGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 917501 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || || | ||||||||||| || |||||||||||||||||| Sbjct 917502 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCC 917546 >seq37 Length=2664577 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || |||||||| || || ||| ||||||||| |||||||| || || Sbjct 1936719 CCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC- 1936661 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || ||| |||| || | ||||||||||| || || || |||||||| ||| || Sbjct 1936660 AAGGGTGCGCCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGAGG 1936601 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || || ||| | | | |||||| ||| || Sbjct 1936600 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCAGAAGACTCCAC 1936541 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || ||||| || || ||||| ||||| ||||| Sbjct 1936540 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1936493 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||||||||| || ||| ||||||||| |||||||| || | | Sbjct 1936491 CCTCCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG-C 1936433 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || ||| | || || | |||||||| || || || || |||||||| ||| || Sbjct 1936432 AAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCCGGAGG 1936373 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1936372 GATGCCCTCCTTGTCC 1936357 >seq69 Length=1663458 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||| |||| |||||||| ||| ||||||||||||||||| || Sbjct 149386 CCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCT 149445 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | | || ||||||||||| || ||||| ||||| | ||||| || || Sbjct 149446 AACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 149505 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 149506 ATGCCCTCCTTGTCC 149520 >seq5 Length=5768508 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||| || |||||| ||||||||| |||||||| || || Sbjct 1511110 CCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1511051 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| ||||| || || ||||||||||| ||| ||| Sbjct 1511050 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGCGGG 1510991 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1510990 ATGCCCTCCTTGTCC 1510976 >seq22 Length=3457718 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 33913 CGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCG 33972 ||||| || |||||||| ||| |||||||| ||||||||||||||||| ||| | Sbjct 1877642 CGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGCCCA 1877583 Query 33973 TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | ||||| |||||||| || || | ||||||||| Sbjct 1877582 TCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATC 1877542 >seq16 Length=4050460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || || | ||| Sbjct 2369231 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGC 2369290 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| || || || ||||||||||| ||| ||| | || ||| Sbjct 2369291 CCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 2369350 Query 34030 TTGTCC 34035 |||||| Sbjct 2369351 TTGTCC 2369356 >seq45 Length=2202424 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || || |||||||| || || || ||||||||| ||||||||||| || Sbjct 1623239 CCACCCCTGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGTATGTTGTAATCAGCG 1623180 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | ||| | || || | |||||||||||||| || || | |||||| ||| || Sbjct 1623179 AGTGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 1623120 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1623119 ATGCCCTCCTTGTCC 1623105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397005365212372